Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC21.12■□□□□ 0.97
CCNFP41002 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC21.12■□□□□ 0.97
CCNFP41002 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCNFP41002 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
CCNFP41002 FDFT1-210ENST00000525954 1890 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNFP41002 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNFP41002 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNFP41002 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.11■□□□□ 0.97
CCNFP41002 LHPP-203ENST00000392757 840 ntTSL 3 BASIC21.11■□□□□ 0.97
CCNFP41002 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC21.11■□□□□ 0.97
CCNFP41002 PAFAH1B2-205ENST00000529887 1056 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 JAKMIP1-201ENST00000282924 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
CCNFP41002 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.11■□□□□ 0.97
CCNFP41002 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCNFP41002 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCNFP41002 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
CCNFP41002 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCNFP41002 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.1■□□□□ 0.97
CCNFP41002 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC21.1■□□□□ 0.97
CCNFP41002 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCNFP41002 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
CCNFP41002 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.1■□□□□ 0.97
CCNFP41002 ZFP64-206ENST00000371523 2234 ntTSL 2 BASIC21.09■□□□□ 0.97
CCNFP41002 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.09■□□□□ 0.97
CCNFP41002 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 FBLN5-202ENST00000342058 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 MIR572-201ENST00000384983 95 ntBASIC21.09■□□□□ 0.97
CCNFP41002 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC21.09■□□□□ 0.97
CCNFP41002 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.09■□□□□ 0.97
CCNFP41002 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.09■□□□□ 0.97
CCNFP41002 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 AL391422.3-201ENST00000603791 2761 ntBASIC21.09■□□□□ 0.97
CCNFP41002 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.09■□□□□ 0.97
CCNFP41002 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
CCNFP41002 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCNFP41002 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.08■□□□□ 0.97
CCNFP41002 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.08■□□□□ 0.97
CCNFP41002 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC21.08■□□□□ 0.97
CCNFP41002 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCNFP41002 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC21.08■□□□□ 0.97
CCNFP41002 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCNFP41002 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
CCNFP41002 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCNFP41002 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
CCNFP41002 AC105265.2-201ENST00000467189 838 ntBASIC21.08■□□□□ 0.97
CCNFP41002 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.08■□□□□ 0.97
CCNFP41002 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC21.08■□□□□ 0.97
CCNFP41002 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC21.08■□□□□ 0.96
CCNFP41002 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.08■□□□□ 0.96
CCNFP41002 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
CCNFP41002 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
CCNFP41002 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.07■□□□□ 0.96
CCNFP41002 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
CCNFP41002 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CCNFP41002 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCNFP41002 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 ARPC5L-201ENST00000259477 1325 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 AP004607.7-201ENST00000527152 1677 ntBASIC21.06■□□□□ 0.96
CCNFP41002 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.06■□□□□ 0.96
CCNFP41002 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
CCNFP41002 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.06■□□□□ 0.96
CCNFP41002 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.06■□□□□ 0.96
CCNFP41002 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCNFP41002 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.06■□□□□ 0.96
CCNFP41002 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.9 ms