Protein–RNA interactions for Protein: P40938

RFC3, Replication factor C subunit 3, humanhuman

Predictions only

Length 356 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC3P40938 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.23■□□□□ 0.67
RFC3P40938 AC127496.7-201ENST00000625110 1798 ntBASIC19.23■□□□□ 0.67
RFC3P40938 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.23■□□□□ 0.67
RFC3P40938 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.23■□□□□ 0.67
RFC3P40938 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 INPPL1-201ENST00000298229 4733 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.22■□□□□ 0.67
RFC3P40938 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC19.22■□□□□ 0.67
RFC3P40938 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC19.22■□□□□ 0.67
RFC3P40938 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC19.22■□□□□ 0.67
RFC3P40938 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC19.22■□□□□ 0.67
RFC3P40938 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC19.22■□□□□ 0.67
RFC3P40938 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.22■□□□□ 0.67
RFC3P40938 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.22■□□□□ 0.67
RFC3P40938 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC19.22■□□□□ 0.67
RFC3P40938 HIRA-201ENST00000263208 4053 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.21■□□□□ 0.67
RFC3P40938 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC19.21■□□□□ 0.67
RFC3P40938 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RFC3P40938 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC19.21■□□□□ 0.67
RFC3P40938 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC19.21■□□□□ 0.67
RFC3P40938 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC19.21■□□□□ 0.67
RFC3P40938 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC19.21■□□□□ 0.67
RFC3P40938 AC008175.2-201ENST00000612840 297 ntBASIC19.21■□□□□ 0.67
RFC3P40938 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC19.21■□□□□ 0.67
RFC3P40938 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.21■□□□□ 0.67
RFC3P40938 PARP1-210ENST00000629232 477 ntTSL 5 BASIC19.21■□□□□ 0.67
RFC3P40938 GAMT-205ENST00000640762 751 ntTSL 5 BASIC19.21■□□□□ 0.67
RFC3P40938 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 AC010542.4-201ENST00000563151 1910 ntBASIC19.21■□□□□ 0.67
RFC3P40938 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC19.21■□□□□ 0.67
RFC3P40938 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
RFC3P40938 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC3P40938 AC061975.6-201ENST00000579045 1553 ntBASIC19.2■□□□□ 0.66
RFC3P40938 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC3P40938 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC3P40938 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC19.2■□□□□ 0.66
RFC3P40938 METTL15-202ENST00000403099 795 ntTSL 5 BASIC19.2■□□□□ 0.66
RFC3P40938 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC19.2■□□□□ 0.66
RFC3P40938 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC19.2■□□□□ 0.66
RFC3P40938 TERF1P5-201ENST00000477545 1207 ntBASIC19.2■□□□□ 0.66
RFC3P40938 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFC3P40938 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.2■□□□□ 0.66
RFC3P40938 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
RFC3P40938 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.2■□□□□ 0.66
RFC3P40938 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC19.2■□□□□ 0.66
RFC3P40938 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
RFC3P40938 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC19.2■□□□□ 0.66
RFC3P40938 USP48-205ENST00000421625 2818 ntTSL 2 BASIC19.2■□□□□ 0.66
RFC3P40938 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC3P40938 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
RFC3P40938 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC3P40938 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC3P40938 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC19.19■□□□□ 0.66
RFC3P40938 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC3P40938 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC3P40938 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC19.19■□□□□ 0.66
RFC3P40938 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
RFC3P40938 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC19.19■□□□□ 0.66
RFC3P40938 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
RFC3P40938 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC3P40938 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC19.19■□□□□ 0.66
RFC3P40938 AC120498.10-201ENST00000621827 505 ntBASIC19.19■□□□□ 0.66
RFC3P40938 FAM99A-202ENST00000538190 1989 ntBASIC19.19■□□□□ 0.66
RFC3P40938 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
RFC3P40938 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.18■□□□□ 0.66
RFC3P40938 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC19.18■□□□□ 0.66
RFC3P40938 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 APTR-205ENST00000447009 902 ntTSL 2 BASIC19.18■□□□□ 0.66
RFC3P40938 TSPY6P-201ENST00000448518 926 ntBASIC19.18■□□□□ 0.66
RFC3P40938 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC19.18■□□□□ 0.66
RFC3P40938 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 AL138781.1-201ENST00000566567 1274 ntBASIC19.18■□□□□ 0.66
RFC3P40938 AC105036.2-201ENST00000569468 176 ntBASIC19.18■□□□□ 0.66
RFC3P40938 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 AC013268.1-206ENST00000638368 961 ntBASIC19.18■□□□□ 0.66
RFC3P40938 AC112229.1-201ENST00000639295 961 ntBASIC19.18■□□□□ 0.66
RFC3P40938 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.18■□□□□ 0.66
RFC3P40938 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.18■□□□□ 0.66
RFC3P40938 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
RFC3P40938 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC19.17■□□□□ 0.66
RFC3P40938 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms