Protein–RNA interactions for Protein: P35249

RFC4, Replication factor C subunit 4, humanhuman

Predictions only

Length 363 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4P35249 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
RFC4P35249 GPR143-203ENST00000467482 1762 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RFC4P35249 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
RFC4P35249 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC26.65■■□□□ 1.86
RFC4P35249 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC26.65■■□□□ 1.86
RFC4P35249 AC087742.1-201ENST00000575880 1738 ntBASIC26.65■■□□□ 1.86
RFC4P35249 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC26.65■■□□□ 1.86
RFC4P35249 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC26.65■■□□□ 1.86
RFC4P35249 AC091799.1-201ENST00000422823 811 ntBASIC26.64■■□□□ 1.86
RFC4P35249 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC26.64■■□□□ 1.86
RFC4P35249 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC26.64■■□□□ 1.86
RFC4P35249 AC004771.5-201ENST00000575985 542 ntTSL 4 BASIC26.64■■□□□ 1.86
RFC4P35249 MIR4497-201ENST00000583208 89 ntBASIC26.64■■□□□ 1.86
RFC4P35249 UBALD1-209ENST00000591897 1275 ntTSL 2 BASIC26.64■■□□□ 1.86
RFC4P35249 SLC35A2-213ENST00000635015 1008 ntTSL 2 BASIC26.64■■□□□ 1.86
RFC4P35249 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.86
RFC4P35249 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC26.64■■□□□ 1.85
RFC4P35249 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC26.64■■□□□ 1.85
RFC4P35249 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC26.64■■□□□ 1.85
RFC4P35249 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
RFC4P35249 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC26.63■■□□□ 1.85
RFC4P35249 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
RFC4P35249 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC26.63■■□□□ 1.85
RFC4P35249 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC26.63■■□□□ 1.85
RFC4P35249 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC26.63■■□□□ 1.85
RFC4P35249 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC26.63■■□□□ 1.85
RFC4P35249 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.63■■□□□ 1.85
RFC4P35249 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC26.62■■□□□ 1.85
RFC4P35249 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC26.62■■□□□ 1.85
RFC4P35249 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC26.62■■□□□ 1.85
RFC4P35249 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC26.62■■□□□ 1.85
RFC4P35249 ZDHHC20-204ENST00000415724 1296 ntAPPRIS ALT2 TSL 5 BASIC26.62■■□□□ 1.85
RFC4P35249 KRT17P3-201ENST00000420566 1262 ntBASIC26.62■■□□□ 1.85
RFC4P35249 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC26.62■■□□□ 1.85
RFC4P35249 TNIK-208ENST00000465393 750 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
RFC4P35249 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC26.62■■□□□ 1.85
RFC4P35249 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC26.62■■□□□ 1.85
RFC4P35249 AL024498.1-202ENST00000606652 480 ntTSL 2 BASIC26.62■■□□□ 1.85
RFC4P35249 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC26.62■■□□□ 1.85
RFC4P35249 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
RFC4P35249 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC26.62■■□□□ 1.85
RFC4P35249 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC26.62■■□□□ 1.85
RFC4P35249 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC26.62■■□□□ 1.85
RFC4P35249 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 CDV3P1-201ENST00000471403 739 ntBASIC26.61■■□□□ 1.85
RFC4P35249 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 GRAMD1B-209ENST00000533341 707 ntTSL 2 BASIC26.61■■□□□ 1.85
RFC4P35249 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC26.61■■□□□ 1.85
RFC4P35249 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC26.61■■□□□ 1.85
RFC4P35249 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
RFC4P35249 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC26.6■■□□□ 1.85
RFC4P35249 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC26.6■■□□□ 1.85
RFC4P35249 SLC25A39-212ENST00000590194 1542 ntAPPRIS P3 TSL 5 BASIC26.6■■□□□ 1.85
RFC4P35249 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
RFC4P35249 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC26.6■■□□□ 1.85
RFC4P35249 PNMA6B-201ENST00000538162 1200 ntBASIC26.6■■□□□ 1.85
RFC4P35249 AL589743.5-201ENST00000616611 1050 ntBASIC26.6■■□□□ 1.85
RFC4P35249 AC005225.2-202ENST00000617980 408 ntTSL 4 BASIC26.6■■□□□ 1.85
RFC4P35249 AC139530.1-201ENST00000575312 1977 ntBASIC26.6■■□□□ 1.85
RFC4P35249 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC26.6■■□□□ 1.85
RFC4P35249 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RFC4P35249 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC26.59■■□□□ 1.85
RFC4P35249 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC26.59■■□□□ 1.85
RFC4P35249 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RFC4P35249 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC26.59■■□□□ 1.85
RFC4P35249 ECEL1P3-201ENST00000427961 737 ntBASIC26.59■■□□□ 1.85
RFC4P35249 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC26.59■■□□□ 1.85
RFC4P35249 AC073912.3-201ENST00000624414 853 ntBASIC26.59■■□□□ 1.85
RFC4P35249 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RFC4P35249 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
RFC4P35249 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC26.59■■□□□ 1.85
RFC4P35249 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC26.59■■□□□ 1.85
RFC4P35249 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.59■■□□□ 1.85
RFC4P35249 AC003102.1-202ENST00000563394 1796 ntBASIC26.58■■□□□ 1.85
RFC4P35249 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 STK32C-201ENST00000298630 2086 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC26.58■■□□□ 1.85
RFC4P35249 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 RN7SL471P-201ENST00000580476 299 ntBASIC26.58■■□□□ 1.85
RFC4P35249 Z99916.2-201ENST00000604037 246 ntBASIC26.58■■□□□ 1.85
RFC4P35249 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC26.58■■□□□ 1.85
RFC4P35249 AC092368.3-202ENST00000574180 1591 ntBASIC26.58■■□□□ 1.85
RFC4P35249 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC26.58■■□□□ 1.84
RFC4P35249 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
RFC4P35249 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC26.57■■□□□ 1.84
RFC4P35249 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC26.57■■□□□ 1.84
RFC4P35249 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC26.57■■□□□ 1.84
RFC4P35249 AGTRAP-203ENST00000376629 1100 ntAPPRIS ALT2 TSL 1 (best) BASIC26.57■■□□□ 1.84
RFC4P35249 GXYLT1P3-201ENST00000453058 1193 ntBASIC26.57■■□□□ 1.84
RFC4P35249 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC26.57■■□□□ 1.84
RFC4P35249 SPIB-206ENST00000596074 847 ntTSL 2 BASIC26.57■■□□□ 1.84
Retrieved 100 of 98,524 protein–RNA pairs in 27.6 ms