Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AC073210.2-201ENST00000430369 194 ntBASIC17.76■□□□□ 0.43
USF1P22415 APTR-203ENST00000430801 583 ntTSL 5 BASIC17.76■□□□□ 0.43
USF1P22415 TERF1P5-201ENST00000477545 1207 ntBASIC17.76■□□□□ 0.43
USF1P22415 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.76■□□□□ 0.43
USF1P22415 LIMD2-202ENST00000578061 756 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
USF1P22415 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC17.76■□□□□ 0.43
USF1P22415 BHLHA15-202ENST00000609256 796 ntAPPRIS P1 TSL 3 BASIC17.76■□□□□ 0.43
USF1P22415 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF1P22415 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
USF1P22415 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF1P22415 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC17.76■□□□□ 0.43
USF1P22415 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.76■□□□□ 0.43
USF1P22415 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.76■□□□□ 0.43
USF1P22415 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
USF1P22415 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF1P22415 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
USF1P22415 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC17.75■□□□□ 0.43
USF1P22415 TERT-206ENST00000508104 2486 ntTSL 5 BASIC17.75■□□□□ 0.43
USF1P22415 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC17.75■□□□□ 0.43
USF1P22415 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USF1P22415 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC17.75■□□□□ 0.43
USF1P22415 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
USF1P22415 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC17.75■□□□□ 0.43
USF1P22415 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC17.75■□□□□ 0.43
USF1P22415 BET1L-204ENST00000410108 637 ntTSL 3 BASIC17.75■□□□□ 0.43
USF1P22415 FAM201B-201ENST00000458407 597 ntBASIC17.75■□□□□ 0.43
USF1P22415 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC17.75■□□□□ 0.43
USF1P22415 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC17.75■□□□□ 0.43
USF1P22415 AC053503.5-201ENST00000601508 636 ntBASIC17.75■□□□□ 0.43
USF1P22415 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
USF1P22415 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 LTK-202ENST00000355166 2940 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
USF1P22415 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC17.74■□□□□ 0.43
USF1P22415 SLC41A3-201ENST00000315891 1797 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC17.74■□□□□ 0.43
USF1P22415 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 NOC4L-201ENST00000330579 1632 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC17.74■□□□□ 0.43
USF1P22415 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
USF1P22415 EEF1DP3-203ENST00000566025 782 ntBASIC17.74■□□□□ 0.43
USF1P22415 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC17.74■□□□□ 0.43
USF1P22415 MIR4758-201ENST00000577688 71 ntBASIC17.74■□□□□ 0.43
USF1P22415 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC17.74■□□□□ 0.43
USF1P22415 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC17.74■□□□□ 0.43
USF1P22415 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
USF1P22415 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC17.73■□□□□ 0.43
USF1P22415 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
USF1P22415 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC17.73■□□□□ 0.43
USF1P22415 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 CD8B-205ENST00000393761 932 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 CD8B-206ENST00000431506 692 ntAPPRIS ALT2 TSL 5 BASIC17.73■□□□□ 0.43
USF1P22415 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC17.73■□□□□ 0.43
USF1P22415 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC17.73■□□□□ 0.43
USF1P22415 CIRBP-214ENST00000587896 1081 ntTSL 2 BASIC17.73■□□□□ 0.43
USF1P22415 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC17.73■□□□□ 0.43
USF1P22415 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC17.73■□□□□ 0.43
USF1P22415 AC120498.10-201ENST00000621827 505 ntBASIC17.73■□□□□ 0.43
USF1P22415 ZNF280B-203ENST00000626650 5721 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
USF1P22415 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 EP400NL-214ENST00000641289 2402 ntBASIC17.73■□□□□ 0.43
USF1P22415 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
USF1P22415 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
USF1P22415 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC17.72■□□□□ 0.43
USF1P22415 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC17.72■□□□□ 0.43
USF1P22415 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
USF1P22415 MRPL37-206ENST00000605337 1582 ntTSL 5 BASIC17.72■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 25.4 ms