Protein–RNA interactions for Protein: P0CW19

LIMS3, LIM and senescent cell antigen-like-containing domain protein 3, humanhuman

Predictions only

Length 117 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3P0CW19 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 DMWD-202ENST00000377735 3292 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 AC027702.1-201ENST00000563810 1770 ntBASIC18.7■□□□□ 0.58
LIMS3P0CW19 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
LIMS3P0CW19 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC18.7■□□□□ 0.58
LIMS3P0CW19 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 ME2-218ENST00000640965 2476 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 ZNF276-208ENST00000568064 2203 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 UNC93B8-201ENST00000511903 705 ntBASIC18.69■□□□□ 0.58
LIMS3P0CW19 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 FUT5-202ENST00000588525 1988 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 ZNF746-203ENST00000461958 5051 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 TTBK1-202ENST00000304139 2449 ntTSL 5 BASIC18.69■□□□□ 0.58
LIMS3P0CW19 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
LIMS3P0CW19 ADRM1-205ENST00000620230 1361 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 CPT2-203ENST00000635862 2319 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 NARF-205ENST00000412079 1760 ntTSL 5 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 PNMT-201ENST00000269582 1253 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 SLC25A39-203ENST00000537904 1274 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 VPS53-201ENST00000291074 2656 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
LIMS3P0CW19 AP006587.3-201ENST00000525742 1516 ntBASIC18.68■□□□□ 0.58
LIMS3P0CW19 GATM-206ENST00000558336 1522 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC18.68■□□□□ 0.58
LIMS3P0CW19 DACH1-201ENST00000611519 4789 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMS3P0CW19 CHST8-203ENST00000438847 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMS3P0CW19 AC004540.2-202ENST00000451264 508 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMS3P0CW19 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC18.67■□□□□ 0.58
LIMS3P0CW19 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.67■□□□□ 0.58
LIMS3P0CW19 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMS3P0CW19 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMS3P0CW19 ASB16-201ENST00000293414 2139 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMS3P0CW19 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
LIMS3P0CW19 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC18.66■□□□□ 0.58
LIMS3P0CW19 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 CUL4A-209ENST00000488558 1111 ntTSL 3 BASIC18.66■□□□□ 0.58
LIMS3P0CW19 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
LIMS3P0CW19 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC18.66■□□□□ 0.58
LIMS3P0CW19 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
LIMS3P0CW19 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 DTX3-201ENST00000337737 2029 ntAPPRIS P3 TSL 2 BASIC18.66■□□□□ 0.58
LIMS3P0CW19 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
LIMS3P0CW19 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMS3P0CW19 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMS3P0CW19 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMS3P0CW19 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
LIMS3P0CW19 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
LIMS3P0CW19 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC18.65■□□□□ 0.58
LIMS3P0CW19 MRPS34-202ENST00000397375 1024 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMS3P0CW19 AK3-203ENST00000447596 705 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMS3P0CW19 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMS3P0CW19 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC18.65■□□□□ 0.58
LIMS3P0CW19 KCNMB4-201ENST00000258111 4731 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
LIMS3P0CW19 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIMS3P0CW19 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
LIMS3P0CW19 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.64■□□□□ 0.58
LIMS3P0CW19 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.64■□□□□ 0.58
LIMS3P0CW19 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
LIMS3P0CW19 PQLC2-201ENST00000375153 2153 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 AC121338.2-201ENST00000622535 1744 ntBASIC18.64■□□□□ 0.57
LIMS3P0CW19 IL17RE-206ENST00000454190 2757 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMS3P0CW19 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
LIMS3P0CW19 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC18.64■□□□□ 0.57
LIMS3P0CW19 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.64■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms