Protein–RNA interactions for Protein: O75487

GPC4, Glypican-4, humanhuman

Predictions only

Length 556 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GPC4O75487 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21■□□□□ 0.95
GPC4O75487 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC21■□□□□ 0.95
GPC4O75487 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC21■□□□□ 0.95
GPC4O75487 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
GPC4O75487 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21■□□□□ 0.95
GPC4O75487 HOOK1-201ENST00000371208 5857 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
GPC4O75487 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21■□□□□ 0.95
GPC4O75487 ADGRL1-202ENST00000361434 5610 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
GPC4O75487 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.99■□□□□ 0.95
GPC4O75487 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC20.99■□□□□ 0.95
GPC4O75487 CHRAC1-203ENST00000519533 1678 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
GPC4O75487 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.99■□□□□ 0.95
GPC4O75487 HCN1-202ENST00000634658 4738 ntTSL 3 BASIC20.99■□□□□ 0.95
GPC4O75487 AP006587.3-201ENST00000525742 1516 ntBASIC20.99■□□□□ 0.95
GPC4O75487 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC20.99■□□□□ 0.95
GPC4O75487 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC20.99■□□□□ 0.95
GPC4O75487 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
GPC4O75487 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
GPC4O75487 MAG-202ENST00000392213 2390 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
GPC4O75487 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC20.99■□□□□ 0.95
GPC4O75487 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
GPC4O75487 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.99■□□□□ 0.95
GPC4O75487 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
GPC4O75487 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC20.99■□□□□ 0.95
GPC4O75487 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC20.99■□□□□ 0.95
GPC4O75487 AC005224.4-201ENST00000583262 1652 ntBASIC20.99■□□□□ 0.95
GPC4O75487 AC055733.4-201ENST00000638462 1354 ntBASIC20.98■□□□□ 0.95
GPC4O75487 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC20.98■□□□□ 0.95
GPC4O75487 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.98■□□□□ 0.95
GPC4O75487 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC20.98■□□□□ 0.95
GPC4O75487 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 AC019069.1-201ENST00000610008 1333 ntBASIC20.98■□□□□ 0.95
GPC4O75487 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
GPC4O75487 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
GPC4O75487 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
GPC4O75487 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
GPC4O75487 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
GPC4O75487 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
GPC4O75487 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
GPC4O75487 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC20.97■□□□□ 0.95
GPC4O75487 LGR4-203ENST00000480977 492 ntTSL 2 BASIC20.97■□□□□ 0.95
GPC4O75487 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.97■□□□□ 0.95
GPC4O75487 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC20.97■□□□□ 0.95
GPC4O75487 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
GPC4O75487 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC20.96■□□□□ 0.95
GPC4O75487 ZDHHC7-203ENST00000564466 1488 ntTSL 5 BASIC20.96■□□□□ 0.95
GPC4O75487 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.96■□□□□ 0.95
GPC4O75487 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC20.96■□□□□ 0.95
GPC4O75487 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
GPC4O75487 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC20.96■□□□□ 0.95
GPC4O75487 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
GPC4O75487 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC20.96■□□□□ 0.95
GPC4O75487 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
GPC4O75487 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
GPC4O75487 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
GPC4O75487 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.96■□□□□ 0.95
GPC4O75487 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.95■□□□□ 0.94
GPC4O75487 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC20.95■□□□□ 0.94
GPC4O75487 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
GPC4O75487 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
GPC4O75487 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
GPC4O75487 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC20.95■□□□□ 0.94
GPC4O75487 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.95■□□□□ 0.94
GPC4O75487 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
GPC4O75487 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
GPC4O75487 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
GPC4O75487 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
GPC4O75487 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC20.95■□□□□ 0.94
GPC4O75487 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
GPC4O75487 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.95■□□□□ 0.94
GPC4O75487 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.95■□□□□ 0.94
GPC4O75487 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
GPC4O75487 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
GPC4O75487 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
GPC4O75487 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC20.94■□□□□ 0.94
GPC4O75487 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
GPC4O75487 AC123595.1-201ENST00000440769 1046 ntBASIC20.94■□□□□ 0.94
GPC4O75487 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.94■□□□□ 0.94
GPC4O75487 SP2-202ENST00000613139 908 ntTSL 5 BASIC20.94■□□□□ 0.94
GPC4O75487 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.94■□□□□ 0.94
GPC4O75487 LPAR1-201ENST00000358883 2687 ntAPPRIS P2 TSL 2 BASIC20.94■□□□□ 0.94
GPC4O75487 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.94■□□□□ 0.94
GPC4O75487 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.94■□□□□ 0.94
GPC4O75487 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
GPC4O75487 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
GPC4O75487 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.94■□□□□ 0.94
GPC4O75487 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
GPC4O75487 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC20.94■□□□□ 0.94
GPC4O75487 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC20.94■□□□□ 0.94
GPC4O75487 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
GPC4O75487 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
GPC4O75487 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.93■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms