Protein–RNA interactions for Protein: O75445

USH2A, Usherin, humanhuman

Predictions only

Length 5,202 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USH2AO75445 FGF8-207ENST00000618991 856 ntTSL 3 BASIC9.52□□□□□ -0.89
USH2AO75445 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 AC092368.3-202ENST00000574180 1591 ntBASIC9.52□□□□□ -0.89
USH2AO75445 SLC38A8-201ENST00000299709 1308 ntAPPRIS P1 TSL 5 BASIC9.52□□□□□ -0.89
USH2AO75445 ACP1-205ENST00000407983 703 ntTSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC9.52□□□□□ -0.89
USH2AO75445 UBL5-202ENST00000586895 432 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC9.52□□□□□ -0.89
USH2AO75445 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC9.52□□□□□ -0.89
USH2AO75445 AL353803.4-201ENST00000565882 1934 ntBASIC9.51□□□□□ -0.89
USH2AO75445 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC9.51□□□□□ -0.89
USH2AO75445 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC9.51□□□□□ -0.89
USH2AO75445 AC133681.1-201ENST00000465482 601 ntBASIC9.51□□□□□ -0.89
USH2AO75445 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC9.51□□□□□ -0.89
USH2AO75445 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC9.51□□□□□ -0.89
USH2AO75445 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 KRT16P2-201ENST00000414673 1423 ntBASIC9.51□□□□□ -0.89
USH2AO75445 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC9.51□□□□□ -0.89
USH2AO75445 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
USH2AO75445 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC9.51□□□□□ -0.89
USH2AO75445 CYP2D8P-201ENST00000433633 1490 ntBASIC9.51□□□□□ -0.89
USH2AO75445 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC9.51□□□□□ -0.89
USH2AO75445 THRA-202ENST00000394121 2260 ntTSL 2 BASIC9.51□□□□□ -0.89
USH2AO75445 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC9.51□□□□□ -0.89
USH2AO75445 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC9.51□□□□□ -0.89
USH2AO75445 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 LY6L-201ENST00000562505 988 ntAPPRIS P1 TSL 5 BASIC9.51□□□□□ -0.89
USH2AO75445 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC9.51□□□□□ -0.89
USH2AO75445 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC9.51□□□□□ -0.89
USH2AO75445 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC9.51□□□□□ -0.89
USH2AO75445 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 KRT18P48-201ENST00000434763 852 ntBASIC9.5□□□□□ -0.89
USH2AO75445 AK2-204ENST00000467905 880 ntAPPRIS ALT1 TSL 2 BASIC9.5□□□□□ -0.89
USH2AO75445 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC9.5□□□□□ -0.89
USH2AO75445 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 GPALPP1-207ENST00000611650 899 ntBASIC9.5□□□□□ -0.89
USH2AO75445 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC9.5□□□□□ -0.89
USH2AO75445 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 ACTL10-201ENST00000330271 2028 ntAPPRIS P1 BASIC9.5□□□□□ -0.89
USH2AO75445 BIN1-201ENST00000259238 2338 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC9.5□□□□□ -0.89
USH2AO75445 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC9.5□□□□□ -0.89
USH2AO75445 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC9.5□□□□□ -0.89
USH2AO75445 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC9.5□□□□□ -0.89
USH2AO75445 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
USH2AO75445 CD44-222ENST00000526025 1052 ntTSL 2 BASIC9.5□□□□□ -0.89
USH2AO75445 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC9.5□□□□□ -0.89
USH2AO75445 AC006011.2-201ENST00000621313 1158 ntBASIC9.5□□□□□ -0.89
USH2AO75445 SOX15-201ENST00000250055 1396 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC9.5□□□□□ -0.89
USH2AO75445 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 KCNMB3-202ENST00000349697 1228 ntAPPRIS P1 TSL 5 BASIC9.5□□□□□ -0.89
USH2AO75445 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 AC226101.2-201ENST00000458252 747 ntTSL 2 BASIC9.5□□□□□ -0.89
USH2AO75445 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC9.5□□□□□ -0.89
USH2AO75445 ACAA1-219ENST00000625927 1760 ntTSL 5 BASIC9.5□□□□□ -0.89
USH2AO75445 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC9.5□□□□□ -0.89
USH2AO75445 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC9.5□□□□□ -0.89
USH2AO75445 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC9.49□□□□□ -0.89
USH2AO75445 AC060766.5-201ENST00000590539 871 ntBASIC9.49□□□□□ -0.89
USH2AO75445 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 FOXN3-209ENST00000555353 1595 ntAPPRIS P3 TSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 ST8SIA1-202ENST00000381424 1036 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC9.49□□□□□ -0.89
USH2AO75445 LRRC75A-AS1-225ENST00000581913 1091 ntTSL 2 BASIC9.49□□□□□ -0.89
USH2AO75445 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 LINC00543-201ENST00000567234 1845 ntBASIC9.49□□□□□ -0.89
USH2AO75445 MSANTD2-201ENST00000239614 2495 ntTSL 2 BASIC9.49□□□□□ -0.89
USH2AO75445 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 PTP4A3-206ENST00000524028 963 ntTSL 5 BASIC9.49□□□□□ -0.89
USH2AO75445 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC9.49□□□□□ -0.89
USH2AO75445 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 GCK-205ENST00000437084 1385 ntTSL 5 BASIC9.49□□□□□ -0.89
USH2AO75445 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 RPUSD1-201ENST00000007264 2050 ntAPPRIS P1 TSL 2 BASIC9.49□□□□□ -0.89
USH2AO75445 GPS1-204ENST00000392358 2276 ntTSL 1 (best) BASIC9.49□□□□□ -0.89
USH2AO75445 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC9.49□□□□□ -0.89
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms