Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC21.14■□□□□ 0.97
SHOX2O60902 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.14■□□□□ 0.97
SHOX2O60902 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHOX2O60902 KCTD18-201ENST00000359878 2940 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SHOX2O60902 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHOX2O60902 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC21.13■□□□□ 0.97
SHOX2O60902 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHOX2O60902 LRP8-204ENST00000371454 3322 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHOX2O60902 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.13■□□□□ 0.97
SHOX2O60902 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC21.13■□□□□ 0.97
SHOX2O60902 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHOX2O60902 RARRES2P2-201ENST00000394842 485 ntBASIC21.13■□□□□ 0.97
SHOX2O60902 LIME1-206ENST00000487026 805 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SHOX2O60902 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC21.13■□□□□ 0.97
SHOX2O60902 LEMD2-201ENST00000293760 2958 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SHOX2O60902 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SHOX2O60902 SAMD11-213ENST00000618181 2179 ntAPPRIS ALT2 TSL 5 BASIC21.13■□□□□ 0.97
SHOX2O60902 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.13■□□□□ 0.97
SHOX2O60902 EPN3-216ENST00000537145 2223 ntTSL 5 BASIC21.12■□□□□ 0.97
SHOX2O60902 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHOX2O60902 GLRB-207ENST00000541722 2765 ntTSL 5 BASIC21.12■□□□□ 0.97
SHOX2O60902 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SHOX2O60902 PXMP2-205ENST00000543589 632 ntTSL 3 BASIC21.12■□□□□ 0.97
SHOX2O60902 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC21.12■□□□□ 0.97
SHOX2O60902 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC21.12■□□□□ 0.97
SHOX2O60902 AC007225.1-201ENST00000566331 1836 ntBASIC21.12■□□□□ 0.97
SHOX2O60902 PTBP1-220ENST00000627714 2201 ntTSL 5 BASIC21.12■□□□□ 0.97
SHOX2O60902 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
SHOX2O60902 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC21.12■□□□□ 0.97
SHOX2O60902 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC21.11■□□□□ 0.97
SHOX2O60902 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
SHOX2O60902 LDHD-202ENST00000450168 1966 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHOX2O60902 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC21.11■□□□□ 0.97
SHOX2O60902 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.11■□□□□ 0.97
SHOX2O60902 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC21.11■□□□□ 0.97
SHOX2O60902 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC21.11■□□□□ 0.97
SHOX2O60902 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC21.11■□□□□ 0.97
SHOX2O60902 NFIB-208ENST00000397581 3318 ntTSL 5 BASIC21.11■□□□□ 0.97
SHOX2O60902 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
SHOX2O60902 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHOX2O60902 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC21.11■□□□□ 0.97
SHOX2O60902 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHOX2O60902 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHOX2O60902 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHOX2O60902 SSTR4-201ENST00000255008 1427 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
SHOX2O60902 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
SHOX2O60902 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHOX2O60902 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHOX2O60902 RND1-201ENST00000309739 1681 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHOX2O60902 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
SHOX2O60902 AC079089.2-201ENST00000531211 1277 ntBASIC21.1■□□□□ 0.97
SHOX2O60902 AC129492.7-201ENST00000622992 756 ntBASIC21.1■□□□□ 0.97
SHOX2O60902 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
SHOX2O60902 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC21.1■□□□□ 0.97
SHOX2O60902 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
SHOX2O60902 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC21.1■□□□□ 0.97
SHOX2O60902 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHOX2O60902 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHOX2O60902 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
SHOX2O60902 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 PARD3-209ENST00000374790 5825 ntTSL 5 BASIC21.09■□□□□ 0.97
SHOX2O60902 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
SHOX2O60902 FXYD7-204ENST00000588265 636 ntTSL 2 BASIC21.09■□□□□ 0.97
SHOX2O60902 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 SLC1A6-210ENST00000600144 1735 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.09■□□□□ 0.97
SHOX2O60902 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
SHOX2O60902 ENTPD6-202ENST00000360031 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHOX2O60902 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHOX2O60902 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHOX2O60902 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHOX2O60902 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
SHOX2O60902 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
SHOX2O60902 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.08■□□□□ 0.97
SHOX2O60902 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
SHOX2O60902 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHOX2O60902 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHOX2O60902 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
SHOX2O60902 RHOT2-201ENST00000315082 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
SHOX2O60902 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.08■□□□□ 0.96
SHOX2O60902 RNF135-205ENST00000535306 2098 ntTSL 1 (best) BASIC21.08■□□□□ 0.96
SHOX2O60902 EI24-201ENST00000278903 2455 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHOX2O60902 SDHA-220ENST00000617470 1952 ntTSL 5 BASIC21.07■□□□□ 0.96
SHOX2O60902 RNF8-204ENST00000469731 1800 ntTSL 5 BASIC21.07■□□□□ 0.96
SHOX2O60902 AC022616.5-201ENST00000518796 181 ntBASIC21.07■□□□□ 0.96
SHOX2O60902 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHOX2O60902 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
SHOX2O60902 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
SHOX2O60902 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.07■□□□□ 0.96
SHOX2O60902 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
SHOX2O60902 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC21.06■□□□□ 0.96
SHOX2O60902 DBNDD1-201ENST00000002501 2079 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
SHOX2O60902 SLC27A3-204ENST00000368661 2410 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
SHOX2O60902 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms