Protein–RNA interactions for Protein: O60858

TRIM13, E3 ubiquitin-protein ligase TRIM13, humanhuman

Predictions only

Length 407 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM13O60858 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM13O60858 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM13O60858 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
TRIM13O60858 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC20.66■□□□□ 0.9
TRIM13O60858 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM13O60858 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.66■□□□□ 0.9
TRIM13O60858 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC20.66■□□□□ 0.9
TRIM13O60858 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.66■□□□□ 0.9
TRIM13O60858 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM13O60858 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.66■□□□□ 0.9
TRIM13O60858 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.66■□□□□ 0.9
TRIM13O60858 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.65■□□□□ 0.9
TRIM13O60858 AC092667.1-201ENST00000434301 2586 ntBASIC20.65■□□□□ 0.9
TRIM13O60858 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.65■□□□□ 0.9
TRIM13O60858 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC20.65■□□□□ 0.9
TRIM13O60858 PLK5-205ENST00000642079 1969 ntBASIC20.65■□□□□ 0.9
TRIM13O60858 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM13O60858 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM13O60858 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.65■□□□□ 0.9
TRIM13O60858 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.65■□□□□ 0.9
TRIM13O60858 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.65■□□□□ 0.9
TRIM13O60858 RPP21-222ENST00000433076 577 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM13O60858 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC20.65■□□□□ 0.9
TRIM13O60858 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC20.65■□□□□ 0.9
TRIM13O60858 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC20.65■□□□□ 0.9
TRIM13O60858 GABARAPL3-202ENST00000624044 1851 ntBASIC20.64■□□□□ 0.9
TRIM13O60858 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM13O60858 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM13O60858 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.64■□□□□ 0.9
TRIM13O60858 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.9
TRIM13O60858 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM13O60858 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM13O60858 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 SNX3-202ENST00000349379 890 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM13O60858 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM13O60858 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC20.64■□□□□ 0.89
TRIM13O60858 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC20.64■□□□□ 0.89
TRIM13O60858 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TRIM13O60858 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC20.64■□□□□ 0.89
TRIM13O60858 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC20.64■□□□□ 0.89
TRIM13O60858 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM13O60858 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC20.64■□□□□ 0.89
TRIM13O60858 MIR4466-201ENST00000606121 54 ntBASIC20.64■□□□□ 0.89
TRIM13O60858 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC20.64■□□□□ 0.89
TRIM13O60858 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.64■□□□□ 0.89
TRIM13O60858 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.64■□□□□ 0.89
TRIM13O60858 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC20.64■□□□□ 0.89
TRIM13O60858 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.64■□□□□ 0.89
TRIM13O60858 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 SDHAF3-202ENST00000432641 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM13O60858 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.63■□□□□ 0.89
TRIM13O60858 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.63■□□□□ 0.89
TRIM13O60858 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
TRIM13O60858 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
TRIM13O60858 TRIR-205ENST00000592273 783 ntTSL 3 BASIC20.63■□□□□ 0.89
TRIM13O60858 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.63■□□□□ 0.89
TRIM13O60858 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.63■□□□□ 0.89
TRIM13O60858 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.63■□□□□ 0.89
TRIM13O60858 AP005212.1-201ENST00000581547 1997 ntBASIC20.63■□□□□ 0.89
TRIM13O60858 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM13O60858 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TRIM13O60858 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM13O60858 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM13O60858 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM13O60858 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM13O60858 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM13O60858 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
TRIM13O60858 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC20.62■□□□□ 0.89
TRIM13O60858 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC20.62■□□□□ 0.89
TRIM13O60858 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC20.62■□□□□ 0.89
TRIM13O60858 SMUG1P1-201ENST00000590640 811 ntBASIC20.62■□□□□ 0.89
TRIM13O60858 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
Retrieved 100 of 98,524 protein–RNA pairs in 21.8 ms