Protein–RNA interactions for Protein: O60609

GFRA3, GDNF family receptor alpha-3, humanhuman

Predictions only

Length 400 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
GFRA3O60609 AL158152.2-201ENST00000602703 235 ntTSL 3 BASIC20.72■□□□□ 0.91
GFRA3O60609 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
GFRA3O60609 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC20.72■□□□□ 0.91
GFRA3O60609 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
GFRA3O60609 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
GFRA3O60609 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
GFRA3O60609 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
GFRA3O60609 PDCD2-202ENST00000392090 936 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
GFRA3O60609 AC004540.1-203ENST00000421862 907 ntTSL 5 BASIC20.71■□□□□ 0.91
GFRA3O60609 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.71■□□□□ 0.91
GFRA3O60609 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
GFRA3O60609 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC20.71■□□□□ 0.91
GFRA3O60609 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC20.71■□□□□ 0.91
GFRA3O60609 FBXW5-201ENST00000325285 2274 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
GFRA3O60609 GTPBP3-203ENST00000361619 1894 ntTSL 2 BASIC20.71■□□□□ 0.91
GFRA3O60609 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.91
GFRA3O60609 KRT16P2-201ENST00000414673 1423 ntBASIC20.7■□□□□ 0.9
GFRA3O60609 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC20.7■□□□□ 0.9
GFRA3O60609 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.7■□□□□ 0.9
GFRA3O60609 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
GFRA3O60609 KRASP1-201ENST00000407852 552 ntBASIC20.7■□□□□ 0.9
GFRA3O60609 AL355355.2-201ENST00000442321 338 ntBASIC20.7■□□□□ 0.9
GFRA3O60609 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC20.7■□□□□ 0.9
GFRA3O60609 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC20.7■□□□□ 0.9
GFRA3O60609 AC100791.3-201ENST00000617619 330 ntBASIC20.7■□□□□ 0.9
GFRA3O60609 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
GFRA3O60609 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
GFRA3O60609 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
GFRA3O60609 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.7■□□□□ 0.9
GFRA3O60609 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.7■□□□□ 0.9
GFRA3O60609 OR7E47P-201ENST00000546390 1422 ntBASIC20.7■□□□□ 0.9
GFRA3O60609 NXPH4-201ENST00000349394 1804 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC20.69■□□□□ 0.9
GFRA3O60609 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC20.69■□□□□ 0.9
GFRA3O60609 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 NFU1-202ENST00000394305 1058 ntTSL 5 BASIC20.69■□□□□ 0.9
GFRA3O60609 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC20.69■□□□□ 0.9
GFRA3O60609 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.69■□□□□ 0.9
GFRA3O60609 KRT18P56-201ENST00000507275 550 ntBASIC20.69■□□□□ 0.9
GFRA3O60609 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 NMU-205ENST00000511469 756 ntTSL 3 BASIC20.69■□□□□ 0.9
GFRA3O60609 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.69■□□□□ 0.9
GFRA3O60609 KLF2-202ENST00000592003 564 ntTSL 3 BASIC20.69■□□□□ 0.9
GFRA3O60609 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC20.69■□□□□ 0.9
GFRA3O60609 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC20.69■□□□□ 0.9
GFRA3O60609 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC20.69■□□□□ 0.9
GFRA3O60609 AC006557.6-201ENST00000623071 864 ntBASIC20.69■□□□□ 0.9
GFRA3O60609 CABP2-204ENST00000636477 941 ntTSL 5 BASIC20.69■□□□□ 0.9
GFRA3O60609 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.69■□□□□ 0.9
GFRA3O60609 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC20.69■□□□□ 0.9
GFRA3O60609 PKM-203ENST00000389093 2279 ntTSL 5 BASIC20.69■□□□□ 0.9
GFRA3O60609 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC20.68■□□□□ 0.9
GFRA3O60609 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC20.68■□□□□ 0.9
GFRA3O60609 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.68■□□□□ 0.9
GFRA3O60609 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC20.68■□□□□ 0.9
GFRA3O60609 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.68■□□□□ 0.9
GFRA3O60609 AL137013.1-201ENST00000432946 1228 ntBASIC20.68■□□□□ 0.9
GFRA3O60609 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC20.68■□□□□ 0.9
GFRA3O60609 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC20.68■□□□□ 0.9
GFRA3O60609 RBPMS-AS1-202ENST00000519753 1031 ntTSL 5 BASIC20.68■□□□□ 0.9
GFRA3O60609 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
GFRA3O60609 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.68■□□□□ 0.9
GFRA3O60609 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.68■□□□□ 0.9
GFRA3O60609 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC20.68■□□□□ 0.9
GFRA3O60609 AC079630.1-202ENST00000618127 1840 ntBASIC20.68■□□□□ 0.9
GFRA3O60609 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
GFRA3O60609 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.68■□□□□ 0.9
GFRA3O60609 SLC35B2-205ENST00000538577 1909 ntTSL 2 BASIC20.68■□□□□ 0.9
GFRA3O60609 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.67■□□□□ 0.9
GFRA3O60609 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC20.67■□□□□ 0.9
GFRA3O60609 PACRGL-207ENST00000502938 810 ntTSL 4 BASIC20.67■□□□□ 0.9
GFRA3O60609 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC20.67■□□□□ 0.9
GFRA3O60609 RBM42-202ENST00000586618 771 ntTSL 3 BASIC20.67■□□□□ 0.9
GFRA3O60609 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC20.67■□□□□ 0.9
GFRA3O60609 Six3os1_6.1-201ENST00000620790 196 ntBASIC20.67■□□□□ 0.9
GFRA3O60609 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.67■□□□□ 0.9
GFRA3O60609 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 ABHD1-201ENST00000316470 1400 ntAPPRIS P1 TSL 1 (best) BASIC20.67■□□□□ 0.9
GFRA3O60609 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
GFRA3O60609 AL121749.1-202ENST00000609313 2153 ntBASIC20.66■□□□□ 0.9
GFRA3O60609 AC135731.1-201ENST00000569415 2548 ntBASIC20.66■□□□□ 0.9
GFRA3O60609 TERF1P1-201ENST00000311003 1181 ntBASIC20.66■□□□□ 0.9
GFRA3O60609 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC20.66■□□□□ 0.9
GFRA3O60609 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.66■□□□□ 0.9
GFRA3O60609 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.66■□□□□ 0.9
GFRA3O60609 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC20.66■□□□□ 0.9
GFRA3O60609 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC20.66■□□□□ 0.9
GFRA3O60609 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC20.66■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms