Protein–RNA interactions for Protein: O15379

HDAC3, Histone deacetylase 3, humanhuman

Predictions only

Length 428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3O15379 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.46■□□□□ 0.87
HDAC3O15379 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.46■□□□□ 0.87
HDAC3O15379 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
HDAC3O15379 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDAC3O15379 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDAC3O15379 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20.45■□□□□ 0.86
HDAC3O15379 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.45■□□□□ 0.86
HDAC3O15379 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDAC3O15379 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.45■□□□□ 0.86
HDAC3O15379 SPOCK3-217ENST00000511269 1768 ntAPPRIS P3 TSL 2 BASIC20.45■□□□□ 0.86
HDAC3O15379 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.45■□□□□ 0.86
HDAC3O15379 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC20.45■□□□□ 0.86
HDAC3O15379 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.45■□□□□ 0.86
HDAC3O15379 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC20.45■□□□□ 0.86
HDAC3O15379 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
HDAC3O15379 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.44■□□□□ 0.86
HDAC3O15379 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.44■□□□□ 0.86
HDAC3O15379 OR2A1-AS1-204ENST00000470435 602 ntBASIC20.44■□□□□ 0.86
HDAC3O15379 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.44■□□□□ 0.86
HDAC3O15379 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.44■□□□□ 0.86
HDAC3O15379 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC20.44■□□□□ 0.86
HDAC3O15379 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC20.44■□□□□ 0.86
HDAC3O15379 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
HDAC3O15379 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.44■□□□□ 0.86
HDAC3O15379 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC20.44■□□□□ 0.86
HDAC3O15379 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.44■□□□□ 0.86
HDAC3O15379 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.44■□□□□ 0.86
HDAC3O15379 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.43■□□□□ 0.86
HDAC3O15379 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC20.43■□□□□ 0.86
HDAC3O15379 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 AL138724.1-201ENST00000606771 1088 ntBASIC20.43■□□□□ 0.86
HDAC3O15379 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.43■□□□□ 0.86
HDAC3O15379 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.43■□□□□ 0.86
HDAC3O15379 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.43■□□□□ 0.86
HDAC3O15379 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 GALNT8-202ENST00000433855 5977 ntTSL 2 BASIC20.43■□□□□ 0.86
HDAC3O15379 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.43■□□□□ 0.86
HDAC3O15379 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.42■□□□□ 0.86
HDAC3O15379 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC20.42■□□□□ 0.86
HDAC3O15379 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.42■□□□□ 0.86
HDAC3O15379 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.42■□□□□ 0.86
HDAC3O15379 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC3O15379 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC3O15379 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC3O15379 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC3O15379 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.42■□□□□ 0.86
HDAC3O15379 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC20.42■□□□□ 0.86
HDAC3O15379 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.41■□□□□ 0.86
HDAC3O15379 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.41■□□□□ 0.86
HDAC3O15379 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.41■□□□□ 0.86
HDAC3O15379 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC3O15379 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC3O15379 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC3O15379 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC3O15379 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC3O15379 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC3O15379 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC20.4■□□□□ 0.86
HDAC3O15379 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.4■□□□□ 0.86
HDAC3O15379 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.4■□□□□ 0.86
HDAC3O15379 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.4■□□□□ 0.86
HDAC3O15379 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.4■□□□□ 0.86
HDAC3O15379 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HDAC3O15379 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.86
HDAC3O15379 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC20.39■□□□□ 0.86
HDAC3O15379 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.39■□□□□ 0.86
HDAC3O15379 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC3O15379 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC3O15379 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC20.39■□□□□ 0.85
HDAC3O15379 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC3O15379 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.39■□□□□ 0.85
HDAC3O15379 AL512631.2-201ENST00000604634 923 ntBASIC20.39■□□□□ 0.85
HDAC3O15379 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC3O15379 TDRD10-202ENST00000368482 2331 ntAPPRIS P3 TSL 1 (best) BASIC20.39■□□□□ 0.85
HDAC3O15379 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC20.39■□□□□ 0.85
Retrieved 100 of 98,524 protein–RNA pairs in 56.4 ms