Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
CACNA1AO00555 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
CACNA1AO00555 C16orf91-201ENST00000442039 978 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CACNA1AO00555 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
CACNA1AO00555 ZNF706-204ENST00000518336 501 ntAPPRIS P1 TSL 4 BASIC20.17■□□□□ 0.82
CACNA1AO00555 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CACNA1AO00555 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC20.17■□□□□ 0.82
CACNA1AO00555 EDARADD-201ENST00000334232 858 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1AO00555 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CACNA1AO00555 AC132938.3-201ENST00000579095 357 ntTSL 2 BASIC20.16■□□□□ 0.82
CACNA1AO00555 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1AO00555 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.16■□□□□ 0.82
CACNA1AO00555 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
CACNA1AO00555 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC20.16■□□□□ 0.82
CACNA1AO00555 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
CACNA1AO00555 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC20.16■□□□□ 0.82
CACNA1AO00555 AKTIP-212ENST00000570004 1162 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1AO00555 P2RY2-202ENST00000393596 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
CACNA1AO00555 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC20.15■□□□□ 0.82
CACNA1AO00555 FAM26F-202ENST00000368605 1117 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CACNA1AO00555 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC20.15■□□□□ 0.82
CACNA1AO00555 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC20.15■□□□□ 0.82
CACNA1AO00555 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 AC105020.6-201ENST00000621523 1217 ntBASIC20.15■□□□□ 0.82
CACNA1AO00555 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC20.15■□□□□ 0.82
CACNA1AO00555 CUEDC1-201ENST00000360238 2193 ntAPPRIS P1 TSL 2 BASIC20.15■□□□□ 0.82
CACNA1AO00555 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 PEX11G-201ENST00000221480 1062 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
CACNA1AO00555 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
CACNA1AO00555 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
CACNA1AO00555 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.15■□□□□ 0.82
CACNA1AO00555 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
CACNA1AO00555 CEBPA-AS1-201ENST00000592982 2198 ntBASIC20.15■□□□□ 0.82
CACNA1AO00555 NRXN1-228ENST00000628364 2444 ntTSL 5 BASIC20.15■□□□□ 0.82
CACNA1AO00555 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
CACNA1AO00555 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC20.14■□□□□ 0.82
CACNA1AO00555 AC243732.1-201ENST00000612648 864 ntBASIC20.14■□□□□ 0.82
CACNA1AO00555 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC20.14■□□□□ 0.82
CACNA1AO00555 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC20.14■□□□□ 0.82
CACNA1AO00555 ZDHHC16-206ENST00000370854 1798 ntAPPRIS P4 TSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1AO00555 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1AO00555 HMGN1-203ENST00000380748 829 ntTSL 3 BASIC20.14■□□□□ 0.81
CACNA1AO00555 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC20.14■□□□□ 0.81
CACNA1AO00555 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC20.14■□□□□ 0.81
CACNA1AO00555 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC20.14■□□□□ 0.81
CACNA1AO00555 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1AO00555 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
CACNA1AO00555 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
CACNA1AO00555 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1AO00555 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1AO00555 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1AO00555 SCO2-202ENST00000395693 992 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1AO00555 HDAC11-AS1-201ENST00000424112 515 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1AO00555 SLC25A3P1-201ENST00000443844 931 ntBASIC20.13■□□□□ 0.81
CACNA1AO00555 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1AO00555 OR7E47P-201ENST00000546390 1422 ntBASIC20.13■□□□□ 0.81
CACNA1AO00555 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1AO00555 AC004080.2-201ENST00000523331 556 ntTSL 4 BASIC20.13■□□□□ 0.81
CACNA1AO00555 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC20.13■□□□□ 0.81
CACNA1AO00555 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC20.13■□□□□ 0.81
CACNA1AO00555 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC20.13■□□□□ 0.81
CACNA1AO00555 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1AO00555 FAM86JP-203ENST00000485843 2012 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
CACNA1AO00555 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
CACNA1AO00555 PAX3-201ENST00000258387 958 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 PTPRCAP-201ENST00000326294 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 HGNC:18790-208ENST00000506380 798 ntAPPRIS P1 TSL 3 BASIC20.12■□□□□ 0.81
CACNA1AO00555 CFL1-212ENST00000531413 636 ntTSL 3 BASIC20.12■□□□□ 0.81
CACNA1AO00555 REXO2-208ENST00000539754 791 ntTSL 2 BASIC20.12■□□□□ 0.81
CACNA1AO00555 AC006942.1-201ENST00000600669 520 ntTSL 2 BASIC20.12■□□□□ 0.81
CACNA1AO00555 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
CACNA1AO00555 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC20.12■□□□□ 0.81
CACNA1AO00555 HDAC11-204ENST00000404040 967 ntTSL 3 BASIC20.12■□□□□ 0.81
CACNA1AO00555 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.12■□□□□ 0.81
CACNA1AO00555 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC20.12■□□□□ 0.81
CACNA1AO00555 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 CALM1-205ENST00000553542 877 ntTSL 5 BASIC20.12■□□□□ 0.81
CACNA1AO00555 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 HEXDC-202ENST00000337014 2285 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
CACNA1AO00555 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1AO00555 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1AO00555 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1AO00555 RARRES2-205ENST00000482669 563 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1AO00555 NDUFS3-213ENST00000534716 1263 ntTSL 2 BASIC20.11■□□□□ 0.81
CACNA1AO00555 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
CACNA1AO00555 PQLC1-202ENST00000357575 2475 ntAPPRIS ALT1 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
CACNA1AO00555 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms