Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 AC061975.6-201ENST00000579045 1553 ntBASIC21.51■■□□□ 1.03
CBX4O00257 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.51■■□□□ 1.03
CBX4O00257 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21.51■■□□□ 1.03
CBX4O00257 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.51■■□□□ 1.03
CBX4O00257 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC21.5■■□□□ 1.03
CBX4O00257 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC21.5■■□□□ 1.03
CBX4O00257 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 POU5F1P4-201ENST00000413175 1085 ntBASIC21.5■■□□□ 1.03
CBX4O00257 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.5■■□□□ 1.03
CBX4O00257 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 AC011767.1-201ENST00000617410 1153 ntBASIC21.5■■□□□ 1.03
CBX4O00257 AC120498.10-201ENST00000621827 505 ntBASIC21.5■■□□□ 1.03
CBX4O00257 MYCNOS-205ENST00000641950 531 ntBASIC21.5■■□□□ 1.03
CBX4O00257 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.5■■□□□ 1.03
CBX4O00257 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.49■■□□□ 1.03
CBX4O00257 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.49■■□□□ 1.03
CBX4O00257 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 ASRGL1-201ENST00000301776 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC21.49■■□□□ 1.03
CBX4O00257 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.49■■□□□ 1.03
CBX4O00257 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC21.49■■□□□ 1.03
CBX4O00257 RAP2CP1-201ENST00000605103 478 ntBASIC21.49■■□□□ 1.03
CBX4O00257 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.49■■□□□ 1.03
CBX4O00257 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC21.49■■□□□ 1.03
CBX4O00257 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
CBX4O00257 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
CBX4O00257 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CBX4O00257 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CBX4O00257 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC21.48■■□□□ 1.03
CBX4O00257 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CBX4O00257 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC21.48■■□□□ 1.03
CBX4O00257 CDCA4P2-201ENST00000441182 718 ntBASIC21.48■■□□□ 1.03
CBX4O00257 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
CBX4O00257 MFSD11-216ENST00000590393 1141 ntBASIC21.48■■□□□ 1.03
CBX4O00257 TFG-210ENST00000620299 1289 ntTSL 5 BASIC21.48■■□□□ 1.03
CBX4O00257 AC073111.5-205ENST00000641717 521 ntBASIC21.48■■□□□ 1.03
CBX4O00257 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
CBX4O00257 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC21.48■■□□□ 1.03
CBX4O00257 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC21.48■■□□□ 1.03
CBX4O00257 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
CBX4O00257 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.48■■□□□ 1.03
CBX4O00257 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.48■■□□□ 1.03
CBX4O00257 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
CBX4O00257 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC21.48■■□□□ 1.03
CBX4O00257 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC21.48■■□□□ 1.03
CBX4O00257 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC21.47■■□□□ 1.03
CBX4O00257 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CBX4O00257 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CBX4O00257 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.47■■□□□ 1.03
CBX4O00257 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CBX4O00257 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.47■■□□□ 1.03
CBX4O00257 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC21.47■■□□□ 1.03
CBX4O00257 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CBX4O00257 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CBX4O00257 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
CBX4O00257 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC21.47■■□□□ 1.03
CBX4O00257 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
CBX4O00257 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC21.47■■□□□ 1.03
CBX4O00257 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CBX4O00257 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CBX4O00257 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CBX4O00257 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.46■■□□□ 1.03
CBX4O00257 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC21.46■■□□□ 1.03
CBX4O00257 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.46■■□□□ 1.03
CBX4O00257 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.46■■□□□ 1.03
CBX4O00257 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CBX4O00257 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
CBX4O00257 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
CBX4O00257 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
CBX4O00257 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC21.46■■□□□ 1.03
CBX4O00257 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.45■■□□□ 1.03
CBX4O00257 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC21.45■■□□□ 1.03
CBX4O00257 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC21.45■■□□□ 1.03
CBX4O00257 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CBX4O00257 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CBX4O00257 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CBX4O00257 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.45■■□□□ 1.02
CBX4O00257 LINC02091-201ENST00000576171 1185 ntTSL 5 BASIC21.45■■□□□ 1.02
CBX4O00257 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CBX4O00257 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.45■■□□□ 1.02
CBX4O00257 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
CBX4O00257 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
CBX4O00257 MFF-203ENST00000349901 1716 ntTSL 2 BASIC21.45■■□□□ 1.02
CBX4O00257 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 22.6 ms