Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 MIR4466-201ENST00000606121 54 ntBASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 FAM69B-202ENST00000371692 1668 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 GMPPA-205ENST00000373917 1630 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 TRIR-205ENST00000592273 783 ntTSL 3 BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 PLK5-205ENST00000642079 1969 ntBASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
TRIM49D1C9J1S8 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 RPP21-222ENST00000433076 577 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
TRIM49D1C9J1S8 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
TRIM49D1C9J1S8 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 SNX3-202ENST00000349379 890 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
TRIM49D1C9J1S8 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 SMURF1-202ENST00000361368 5581 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 TRIR-202ENST00000588213 841 ntTSL 3 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21■□□□□ 0.95
TRIM49D1C9J1S8 AC073314.1-201ENST00000568729 2216 ntBASIC21■□□□□ 0.95
TRIM49D1C9J1S8 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 AP005212.1-201ENST00000581547 1997 ntBASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 ACP1-201ENST00000272065 1549 ntAPPRIS P5 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 GABARAPL3-202ENST00000624044 1851 ntBASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 SMUG1P1-201ENST00000590640 811 ntBASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 SF1-220ENST00000626028 704 ntTSL 2 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 ESRRA-202ENST00000405666 2283 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
TRIM49D1C9J1S8 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
TRIM49D1C9J1S8 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC20.98■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 36.9 ms