Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
COL6A5A8TX70 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A5A8TX70 AC079630.1-202ENST00000618127 1840 ntBASIC16.57■□□□□ 0.24
COL6A5A8TX70 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A5A8TX70 KRTAP5-11-201ENST00000398530 1021 ntAPPRIS P2 BASIC16.57■□□□□ 0.24
COL6A5A8TX70 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
COL6A5A8TX70 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
COL6A5A8TX70 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A5A8TX70 EXOC3-209ENST00000512944 2825 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A5A8TX70 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A5A8TX70 AL590666.2-201ENST00000448869 758 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A5A8TX70 KRT18P56-201ENST00000507275 550 ntBASIC16.57■□□□□ 0.24
COL6A5A8TX70 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC16.57■□□□□ 0.24
COL6A5A8TX70 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC16.57■□□□□ 0.24
COL6A5A8TX70 AC100791.3-201ENST00000617619 330 ntBASIC16.57■□□□□ 0.24
COL6A5A8TX70 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A5A8TX70 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A5A8TX70 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
COL6A5A8TX70 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A5A8TX70 AC073343.2-202ENST00000430844 532 ntTSL 4 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
COL6A5A8TX70 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 AC091076.1-201ENST00000610741 619 ntBASIC16.56■□□□□ 0.24
COL6A5A8TX70 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 AL023875.1-201ENST00000640777 796 ntBASIC16.56■□□□□ 0.24
COL6A5A8TX70 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 CDC16-204ENST00000360383 2211 ntAPPRIS P3 TSL 5 BASIC16.56■□□□□ 0.24
COL6A5A8TX70 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 AC073508.3-201ENST00000619697 1419 ntBASIC16.55■□□□□ 0.24
COL6A5A8TX70 CTAG2-201ENST00000247306 993 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 SERF2-207ENST00000409614 582 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 LY6E-205ENST00000519611 635 ntTSL 3 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 LY6E-212ENST00000522024 868 ntAPPRIS P2 TSL 5 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 AC026471.5-201ENST00000615068 467 ntBASIC16.55■□□□□ 0.24
COL6A5A8TX70 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 CABP2-204ENST00000636477 941 ntTSL 5 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 C6orf48-206ENST00000375641 602 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 BCL2L10-202ENST00000561198 825 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 BDKRB1-204ENST00000611804 1085 ntAPPRIS P1 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 AC005363.2-201ENST00000618631 242 ntBASIC16.55■□□□□ 0.24
COL6A5A8TX70 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
COL6A5A8TX70 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
COL6A5A8TX70 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC16.54■□□□□ 0.24
COL6A5A8TX70 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A5A8TX70 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL6A5A8TX70 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC16.54■□□□□ 0.24
COL6A5A8TX70 Six3os1_6.1-201ENST00000620790 196 ntBASIC16.54■□□□□ 0.24
COL6A5A8TX70 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A5A8TX70 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A5A8TX70 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A5A8TX70 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A5A8TX70 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
COL6A5A8TX70 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL6A5A8TX70 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
COL6A5A8TX70 AC113410.3-201ENST00000623366 203 ntBASIC16.54■□□□□ 0.24
COL6A5A8TX70 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL6A5A8TX70 KRT8P9-201ENST00000558927 1449 ntBASIC16.54■□□□□ 0.24
COL6A5A8TX70 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
COL6A5A8TX70 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A5A8TX70 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A5A8TX70 AC005521.1-201ENST00000393351 872 ntBASIC16.53■□□□□ 0.24
COL6A5A8TX70 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC16.53■□□□□ 0.24
COL6A5A8TX70 AC022211.2-202ENST00000582668 546 ntTSL 4 BASIC16.53■□□□□ 0.24
COL6A5A8TX70 AC120498.10-201ENST00000621827 505 ntBASIC16.53■□□□□ 0.24
COL6A5A8TX70 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A5A8TX70 COX7A2L-201ENST00000234301 1112 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A5A8TX70 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
COL6A5A8TX70 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC16.53■□□□□ 0.24
COL6A5A8TX70 CMTM3-211ENST00000565922 615 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A5A8TX70 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC16.53■□□□□ 0.24
COL6A5A8TX70 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC16.53■□□□□ 0.24
COL6A5A8TX70 ZNF768-201ENST00000380412 2315 ntAPPRIS P2 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A5A8TX70 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC16.52■□□□□ 0.24
COL6A5A8TX70 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC16.52■□□□□ 0.24
COL6A5A8TX70 CRYGFP-201ENST00000418459 633 ntBASIC16.52■□□□□ 0.24
COL6A5A8TX70 AQP12A-202ENST00000429564 1110 ntAPPRIS P5 TSL 5 BASIC16.52■□□□□ 0.24
COL6A5A8TX70 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC16.52■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms