Protein–RNA interactions for Protein: Q9Y5I3

PCDHA1, Protocadherin alpha-1, humanhuman

Predictions only

Length 950 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1Q9Y5I3 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 AC231657.2-201ENST00000624556 255 ntBASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
PCDHA1Q9Y5I3 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 ZNF451-202ENST00000370702 458 ntTSL 2 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 MAZ-216ENST00000616501 991 ntTSL 5 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
PCDHA1Q9Y5I3 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 KRT16P2-201ENST00000414673 1423 ntBASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 AC007322.1-201ENST00000426983 750 ntBASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 AL645608.9-201ENST00000442292 829 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 EP400NL-214ENST00000641289 2402 ntBASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
PCDHA1Q9Y5I3 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 PPP1R14BP3-201ENST00000509033 445 ntBASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 GXYLT1P5-201ENST00000614548 1189 ntBASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC24.21■■□□□ 1.47
PCDHA1Q9Y5I3 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.47
PCDHA1Q9Y5I3 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.2■■□□□ 1.47
PCDHA1Q9Y5I3 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC24.2■■□□□ 1.47
PCDHA1Q9Y5I3 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC24.2■■□□□ 1.47
PCDHA1Q9Y5I3 GOLGA2P6-201ENST00000340929 2049 ntBASIC24.2■■□□□ 1.47
PCDHA1Q9Y5I3 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 UQCRFS1P1-201ENST00000435169 820 ntBASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 CNN2P6-201ENST00000439038 900 ntBASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 AC006970.2-201ENST00000450065 779 ntBASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 TERF1P5-201ENST00000477545 1207 ntBASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC24.2■■□□□ 1.46
PCDHA1Q9Y5I3 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 ID1-201ENST00000376105 1233 ntBASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 MIR663A-201ENST00000385250 93 ntBASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 PARP1-210ENST00000629232 477 ntTSL 5 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.19■■□□□ 1.46
PCDHA1Q9Y5I3 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC24.18■■□□□ 1.46
PCDHA1Q9Y5I3 BMP1-204ENST00000397814 836 ntTSL 4 BASIC24.18■■□□□ 1.46
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms