Protein–RNA interactions for Protein: Q9Y5E6

PCDHB3, Protocadherin beta-3, humanhuman

Predictions only

Length 796 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHB3Q9Y5E6 COX20-201ENST00000366528 568 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 AC012414.4-201ENST00000560839 1074 ntTSL 5 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 AC060814.5-201ENST00000630916 1074 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 AC138649.1-201ENST00000619611 1449 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 SLC16A10-202ENST00000368851 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC20.59■□□□□ 0.89
PCDHB3Q9Y5E6 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 AC005229.4-201ENST00000610085 2198 ntBASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 CIZ1-204ENST00000372938 2984 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 AC080038.1-201ENST00000611274 1154 ntBASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 ASL-203ENST00000380839 1765 ntTSL 5 BASIC20.58■□□□□ 0.89
PCDHB3Q9Y5E6 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHB3Q9Y5E6 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHB3Q9Y5E6 DISC1-205ENST00000366636 2224 ntAPPRIS P4 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHB3Q9Y5E6 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHB3Q9Y5E6 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.88
PCDHB3Q9Y5E6 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.58■□□□□ 0.88
PCDHB3Q9Y5E6 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 KRT18P61-201ENST00000585825 1298 ntBASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.57■□□□□ 0.88
PCDHB3Q9Y5E6 AP004607.4-201ENST00000530158 1459 ntBASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 AC009237.3-201ENST00000393279 1427 ntBASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PCDHB3Q9Y5E6 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 HLA-L-209ENST00000420110 1011 ntBASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 AC006015.1-201ENST00000429970 570 ntBASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 ORAI3-204ENST00000566237 1393 ntTSL 5 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 USP21-202ENST00000368001 2095 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
PCDHB3Q9Y5E6 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 AC004854.2-201ENST00000608450 1441 ntBASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 TRH-201ENST00000302649 1978 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 KRT19P1-201ENST00000405746 1186 ntBASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 AC079089.2-201ENST00000531211 1277 ntBASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC20.54■□□□□ 0.88
PCDHB3Q9Y5E6 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PCDHB3Q9Y5E6 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms