Protein–RNA interactions for Protein: Q9Y261

FOXA2, Hepatocyte nuclear factor 3-beta, humanhuman

Predicted RBP Predictions only

Length 457 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA2Q9Y261 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.32
FOXA2Q9Y261 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA2Q9Y261 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA2Q9Y261 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.02■□□□□ 0.31
FOXA2Q9Y261 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC17.02■□□□□ 0.31
FOXA2Q9Y261 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC17.02■□□□□ 0.31
FOXA2Q9Y261 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 COMT-202ENST00000361682 2437 ntAPPRIS P3 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 AC019069.1-201ENST00000610008 1333 ntBASIC17.01■□□□□ 0.31
FOXA2Q9Y261 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 SGTA-201ENST00000221566 2330 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 MIR572-201ENST00000384983 95 ntBASIC17.01■□□□□ 0.31
FOXA2Q9Y261 CROT-202ENST00000412227 1213 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC17.01■□□□□ 0.31
FOXA2Q9Y261 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC17■□□□□ 0.31
FOXA2Q9Y261 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
FOXA2Q9Y261 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 NDUFAF1-201ENST00000260361 1461 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC17■□□□□ 0.31
FOXA2Q9Y261 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 IRS3P-201ENST00000223076 1006 ntBASIC17■□□□□ 0.31
FOXA2Q9Y261 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 RHOF-204ENST00000537265 699 ntTSL 2 BASIC17■□□□□ 0.31
FOXA2Q9Y261 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC17■□□□□ 0.31
FOXA2Q9Y261 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC17■□□□□ 0.31
FOXA2Q9Y261 AC105233.4-201ENST00000642045 216 ntBASIC17■□□□□ 0.31
FOXA2Q9Y261 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC17■□□□□ 0.31
FOXA2Q9Y261 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
FOXA2Q9Y261 AL049796.1-201ENST00000565336 1766 ntBASIC17■□□□□ 0.31
FOXA2Q9Y261 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 GLTPD2-201ENST00000331264 1023 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 NINJ1-201ENST00000375446 1281 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 AP006587.3-201ENST00000525742 1516 ntBASIC16.99■□□□□ 0.31
FOXA2Q9Y261 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 DISC1-212ENST00000535983 2505 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
FOXA2Q9Y261 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 CTAG1A-201ENST00000593606 993 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
FOXA2Q9Y261 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 UQCR11-203ENST00000591899 1324 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
FOXA2Q9Y261 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms