Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM39Q9HCM9 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM39Q9HCM9 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM39Q9HCM9 KCNQ5-213ENST00000629977 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM39Q9HCM9 KRT18P11-201ENST00000435214 1283 ntBASIC20.89■□□□□ 0.93
TRIM39Q9HCM9 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM39Q9HCM9 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC20.89■□□□□ 0.93
TRIM39Q9HCM9 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM39Q9HCM9 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.89■□□□□ 0.93
TRIM39Q9HCM9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 WDR86-203ENST00000469830 1691 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
TRIM39Q9HCM9 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 AC008175.2-201ENST00000612840 297 ntBASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM39Q9HCM9 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 AC004911.1-201ENST00000416316 871 ntBASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 ABCC6P2-202ENST00000542005 706 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 ABCC6-204ENST00000575728 714 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 DYRK1B-204ENST00000593685 2724 ntAPPRIS P3 TSL 5 BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM39Q9HCM9 SLC35A3-204ENST00000427993 2062 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 NAA20-201ENST00000310450 920 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 POU5F1P4-201ENST00000413175 1085 ntBASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 SPI1-203ENST00000533030 661 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.85■□□□□ 0.93
TRIM39Q9HCM9 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 TFG-210ENST00000620299 1289 ntTSL 5 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TRIM39Q9HCM9 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.83■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms