Protein–RNA interactions for Protein: Q96MX0

CMTM3, CKLF-like MARVEL transmembrane domain-containing protein 3, humanhuman

Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CMTM3Q96MX0 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18.14■□□□□ 0.49
CMTM3Q96MX0 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 PANO1-201ENST00000620120 1680 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 CYP2A7-202ENST00000301146 2281 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 AC027702.1-201ENST00000563810 1770 ntBASIC18.13■□□□□ 0.49
CMTM3Q96MX0 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 ST3GAL6-AS1-203ENST00000488132 769 ntTSL 3 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 IGFBP7-203ENST00000514062 1251 ntAPPRIS ALT2 TSL 2 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 TK2-216ENST00000564917 1156 ntTSL 3 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 AC087239.1-201ENST00000622671 572 ntBASIC18.13■□□□□ 0.49
CMTM3Q96MX0 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC18.13■□□□□ 0.49
CMTM3Q96MX0 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 ZGPAT-203ENST00000357119 1896 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 KLHDC9-203ENST00000392192 1333 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 STX4-202ENST00000394998 1498 ntTSL 2 BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 JMJD4-202ENST00000438896 2502 ntTSL 2 BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 ST8SIA2-201ENST00000268164 5708 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CMTM3Q96MX0 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 KLF16-201ENST00000250916 2890 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 PKNOX2-AS1-201ENST00000532316 586 ntTSL 3 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC18.11■□□□□ 0.49
CMTM3Q96MX0 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 AL162377.1-201ENST00000618844 1793 ntBASIC18.11■□□□□ 0.49
CMTM3Q96MX0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 SEMA6B-202ENST00000586965 2034 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 PYCR3-207ENST00000495276 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CMTM3Q96MX0 GTPBP3-222ENST00000600625 2493 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 SLC39A5-209ENST00000454355 1968 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 RBM38-205ENST00000440234 686 ntTSL 2 BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 PTCH1-210ENST00000468211 1254 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 ZNF180-205ENST00000587047 525 ntTSL 4 BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 AFG3L1P-217ENST00000557444 2447 ntBASIC18.1■□□□□ 0.49
CMTM3Q96MX0 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CMTM3Q96MX0 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 FOSL1-202ENST00000448083 1427 ntTSL 2 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 Z92544.1-202ENST00000571933 1220 ntBASIC18.09■□□□□ 0.49
CMTM3Q96MX0 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 SLC16A3-201ENST00000392339 2074 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 SLC16A3-202ENST00000392341 2086 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 PON1-201ENST00000222381 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 AC007225.1-201ENST00000566331 1836 ntBASIC18.09■□□□□ 0.49
CMTM3Q96MX0 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 AC121338.2-201ENST00000622535 1744 ntBASIC18.09■□□□□ 0.49
CMTM3Q96MX0 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
CMTM3Q96MX0 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms