Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SKA1Q96BD8 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 AC004854.2-201ENST00000608450 1441 ntBASIC21.57■■□□□ 1.04
SKA1Q96BD8 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SKA1Q96BD8 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
SKA1Q96BD8 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SKA1Q96BD8 EPHA6-202ENST00000470610 2058 ntTSL 2 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
SKA1Q96BD8 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC21.57■■□□□ 1.04
SKA1Q96BD8 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SKA1Q96BD8 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SKA1Q96BD8 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 TMEM121-201ENST00000392519 1532 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SKA1Q96BD8 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SKA1Q96BD8 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 HLA-L-209ENST00000420110 1011 ntBASIC21.56■■□□□ 1.04
SKA1Q96BD8 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 AC079140.4-201ENST00000507448 529 ntBASIC21.56■■□□□ 1.04
SKA1Q96BD8 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SKA1Q96BD8 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SKA1Q96BD8 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
SKA1Q96BD8 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC21.56■■□□□ 1.04
SKA1Q96BD8 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 USP45-205ENST00000472914 1617 ntTSL 5 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
SKA1Q96BD8 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 AC026185.1-201ENST00000445748 174 ntBASIC21.55■■□□□ 1.04
SKA1Q96BD8 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC21.55■■□□□ 1.04
SKA1Q96BD8 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SKA1Q96BD8 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SKA1Q96BD8 P4HTM-202ENST00000383729 2127 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SKA1Q96BD8 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 AC073111.5-205ENST00000641717 521 ntBASIC21.54■■□□□ 1.04
SKA1Q96BD8 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SKA1Q96BD8 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SKA1Q96BD8 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC21.53■■□□□ 1.04
SKA1Q96BD8 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SKA1Q96BD8 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SKA1Q96BD8 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SKA1Q96BD8 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.04
SKA1Q96BD8 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.52■■□□□ 1.04
SKA1Q96BD8 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.52■■□□□ 1.04
SKA1Q96BD8 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.52■■□□□ 1.04
SKA1Q96BD8 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC21.52■■□□□ 1.04
SKA1Q96BD8 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC21.52■■□□□ 1.04
SKA1Q96BD8 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.52■■□□□ 1.04
SKA1Q96BD8 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.52■■□□□ 1.04
SKA1Q96BD8 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
SKA1Q96BD8 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC21.51■■□□□ 1.03
SKA1Q96BD8 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SKA1Q96BD8 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.51■■□□□ 1.03
SKA1Q96BD8 SLAIN1-206ENST00000418532 2855 ntAPPRIS ALT2 TSL 5 BASIC21.51■■□□□ 1.03
SKA1Q96BD8 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms