Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TTC28Q96AY4 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TTC28Q96AY4 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TTC28Q96AY4 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 PBX1-209ENST00000485769 834 ntTSL 2 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TTC28Q96AY4 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 TERF1P1-201ENST00000311003 1181 ntBASIC21.79■■□□□ 1.08
TTC28Q96AY4 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 NMU-205ENST00000511469 756 ntTSL 3 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TTC28Q96AY4 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TTC28Q96AY4 TMEM235-204ENST00000551068 1187 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC21.79■■□□□ 1.08
TTC28Q96AY4 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TTC28Q96AY4 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TTC28Q96AY4 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 KRT18P22-201ENST00000402024 1347 ntBASIC21.78■■□□□ 1.08
TTC28Q96AY4 SNAPIN-201ENST00000368685 1030 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 AL589743.5-201ENST00000616611 1050 ntBASIC21.78■■□□□ 1.08
TTC28Q96AY4 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
TTC28Q96AY4 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.78■■□□□ 1.08
TTC28Q96AY4 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 ESRRA-201ENST00000000442 2215 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 EI24-213ENST00000618552 1747 ntTSL 5 BASIC21.78■■□□□ 1.08
TTC28Q96AY4 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TTC28Q96AY4 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC21.78■■□□□ 1.08
TTC28Q96AY4 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC21.78■■□□□ 1.08
TTC28Q96AY4 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC21.78■■□□□ 1.08
TTC28Q96AY4 AL358472.4-201ENST00000633140 710 ntBASIC21.78■■□□□ 1.08
TTC28Q96AY4 AL023875.1-201ENST00000640777 796 ntBASIC21.78■■□□□ 1.08
TTC28Q96AY4 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TTC28Q96AY4 HSD11B1L-204ENST00000411793 1362 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TTC28Q96AY4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 IZUMO2-201ENST00000293405 728 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TTC28Q96AY4 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TTC28Q96AY4 ISCU-203ENST00000431221 799 ntTSL 2 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 CHAC1-203ENST00000487220 853 ntTSL 3 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 LINC01184-202ENST00000501173 949 ntTSL 5 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 WWOX-216ENST00000569818 525 ntBASIC21.77■■□□□ 1.08
TTC28Q96AY4 DEDD2-209ENST00000598727 1037 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TTC28Q96AY4 FGF8-207ENST00000618991 856 ntTSL 3 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC21.77■■□□□ 1.08
TTC28Q96AY4 E2F5-203ENST00000418930 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TTC28Q96AY4 PLEKHF1-201ENST00000436066 2084 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TTC28Q96AY4 METTL5-201ENST00000260953 1010 ntAPPRIS P2 TSL 1 (best) BASIC21.77■■□□□ 1.07
TTC28Q96AY4 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.07
TTC28Q96AY4 LY6E-205ENST00000519611 635 ntTSL 3 BASIC21.77■■□□□ 1.07
TTC28Q96AY4 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC21.77■■□□□ 1.07
TTC28Q96AY4 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.07
TTC28Q96AY4 SPINK2-206ENST00000618802 608 ntTSL 3 BASIC21.77■■□□□ 1.07
TTC28Q96AY4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TTC28Q96AY4 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TTC28Q96AY4 LGALS1-201ENST00000215909 560 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TTC28Q96AY4 KRT18P48-201ENST00000434763 852 ntBASIC21.76■■□□□ 1.07
TTC28Q96AY4 CD44-222ENST00000526025 1052 ntTSL 2 BASIC21.76■■□□□ 1.07
TTC28Q96AY4 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC21.76■■□□□ 1.07
TTC28Q96AY4 AC091551.1-201ENST00000590722 1228 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
TTC28Q96AY4 FCMR-210ENST00000628511 1055 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TTC28Q96AY4 SLC22A18-201ENST00000312221 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TTC28Q96AY4 KHDC1-201ENST00000257765 1134 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 UBL5-201ENST00000358666 513 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 GLRX2-201ENST00000367439 701 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 KHDC1-207ENST00000610435 1101 ntAPPRIS P3 TSL 5 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 AC026471.5-201ENST00000615068 467 ntBASIC21.75■■□□□ 1.07
TTC28Q96AY4 ASRGL1-211ENST00000628829 1161 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 GLDC-219ENST00000640208 420 ntTSL 2 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 MMP23B-201ENST00000356026 1326 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 CEACAM3-202ENST00000357396 1316 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 ARRB2-216ENST00000574954 1348 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 HAUS4-203ENST00000347758 1428 ntTSL 2 BASIC21.75■■□□□ 1.07
TTC28Q96AY4 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TTC28Q96AY4 C20orf196-202ENST00000378979 585 ntTSL 2 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 NCAM1-AS1-201ENST00000526229 1081 ntTSL 2 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 CCDC28A-203ENST00000617445 1240 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TTC28Q96AY4 CABP2-204ENST00000636477 941 ntTSL 5 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TTC28Q96AY4 FBXL20-203ENST00000577399 1620 ntTSL 5 BASIC21.74■■□□□ 1.07
TTC28Q96AY4 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
TTC28Q96AY4 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 13.2 ms