Protein–RNA interactions for Protein: Q8WYN0

ATG4A, Cysteine protease ATG4A, humanhuman

Predictions only

Length 398 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4AQ8WYN0 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ATG4AQ8WYN0 HNRNPLL-204ENST00000409328 1908 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
ATG4AQ8WYN0 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
ATG4AQ8WYN0 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
ATG4AQ8WYN0 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 FBXL22-201ENST00000360587 1526 ntAPPRIS P2 TSL 1 (best) BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
ATG4AQ8WYN0 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
ATG4AQ8WYN0 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.08
ATG4AQ8WYN0 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
ATG4AQ8WYN0 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
ATG4AQ8WYN0 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 PRMT5-201ENST00000216350 2271 ntTSL 2 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 AC068580.1-201ENST00000446489 252 ntTSL 3 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 AC126544.1-201ENST00000580842 1059 ntBASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 AC131212.1-201ENST00000613771 668 ntBASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 LINC01006-201ENST00000333319 2292 ntBASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 NARF-205ENST00000412079 1760 ntTSL 5 BASIC21.82■■□□□ 1.08
ATG4AQ8WYN0 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 AC135279.3-201ENST00000610945 1311 ntBASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 CREB3L2-203ENST00000452463 1105 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 PLEKHJ1-213ENST00000591099 1092 ntTSL 2 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
ATG4AQ8WYN0 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 IL20RA-202ENST00000367746 1244 ntTSL 2 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 IGHV3-19-201ENST00000521488 291 ntBASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
ATG4AQ8WYN0 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 TUSC3-209ENST00000509380 1266 ntTSL 5 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 AC008764.7-201ENST00000593779 1081 ntBASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
ATG4AQ8WYN0 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
Retrieved 100 of 98,524 protein–RNA pairs in 10.5 ms