Protein–RNA interactions for Protein: Q8TF72

SHROOM3, Protein Shroom3, humanhuman

Predictions only

Length 1,996 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3Q8TF72 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 SLC35A3-213ENST00000638988 1286 ntTSL 5 BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 MALT1-201ENST00000345724 2866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 AC104986.2-201ENST00000521696 380 ntTSL 2 BASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 KRT18P61-201ENST00000585825 1298 ntBASIC21.56■■□□□ 1.04
SHROOM3Q8TF72 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 DYM-203ENST00000442713 2147 ntTSL 2 BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 AC138907.5-202ENST00000569484 235 ntBASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 AC004854.2-201ENST00000608450 1441 ntBASIC21.55■■□□□ 1.04
SHROOM3Q8TF72 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 AL137060.1-201ENST00000618151 2648 ntBASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 ABHD17AP1-201ENST00000358206 933 ntBASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 AC079140.4-201ENST00000507448 529 ntBASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 DLX3-202ENST00000512495 834 ntTSL 2 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 VPS53-216ENST00000574029 585 ntTSL 4 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC21.54■■□□□ 1.04
SHROOM3Q8TF72 AP004607.4-201ENST00000530158 1459 ntBASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 STK11-205ENST00000586243 2777 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
SHROOM3Q8TF72 PALM-207ENST00000590161 2137 ntTSL 4 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 C5orf38-201ENST00000334000 890 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 AC016769.1-201ENST00000409132 1010 ntBASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.52■■□□□ 1.04
SHROOM3Q8TF72 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.03
SHROOM3Q8TF72 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 HLA-L-209ENST00000420110 1011 ntBASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 AP002748.1-201ENST00000504911 580 ntTSL 3 BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
SHROOM3Q8TF72 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC21.5■■□□□ 1.03
SHROOM3Q8TF72 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC21.5■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 23.4 ms