Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 NAA20-201ENST00000310450 920 ntTSL 2 BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 AC007322.1-201ENST00000426983 750 ntBASIC19.55■□□□□ 0.72
BEST3Q8N1M1 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 WT1-AS_3.1-201ENST00000613262 234 ntBASIC19.55■□□□□ 0.72
BEST3Q8N1M1 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
BEST3Q8N1M1 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 YY1AP1-212ENST00000404643 2654 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 NCF1B-203ENST00000435988 1254 ntBASIC19.54■□□□□ 0.72
BEST3Q8N1M1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 AL109923.1-201ENST00000618799 583 ntBASIC19.54■□□□□ 0.72
BEST3Q8N1M1 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
BEST3Q8N1M1 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 LINC00565-201ENST00000562710 2331 ntBASIC19.53■□□□□ 0.72
BEST3Q8N1M1 DYRK2-202ENST00000344096 8912 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 AC080038.3-201ENST00000623346 1952 ntBASIC19.53■□□□□ 0.72
BEST3Q8N1M1 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 GALC-202ENST00000393568 2054 ntTSL 2 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
BEST3Q8N1M1 DONSON-202ENST00000303113 2028 ntTSL 5 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 STK25-234ENST00000535007 2459 ntTSL 2 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 SLC7A5P2-201ENST00000553010 536 ntBASIC19.52■□□□□ 0.72
BEST3Q8N1M1 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 AC005181.1-201ENST00000604782 1256 ntBASIC19.52■□□□□ 0.72
BEST3Q8N1M1 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 AL050303.2-201ENST00000619798 666 ntBASIC19.52■□□□□ 0.72
BEST3Q8N1M1 AC010536.3-201ENST00000620306 533 ntBASIC19.52■□□□□ 0.72
BEST3Q8N1M1 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
BEST3Q8N1M1 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
BEST3Q8N1M1 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
BEST3Q8N1M1 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.51■□□□□ 0.71
BEST3Q8N1M1 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BEST3Q8N1M1 AC127496.7-201ENST00000625110 1798 ntBASIC19.5■□□□□ 0.71
BEST3Q8N1M1 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC19.5■□□□□ 0.71
BEST3Q8N1M1 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC19.5■□□□□ 0.71
BEST3Q8N1M1 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
BEST3Q8N1M1 GPX1P1-201ENST00000388829 606 ntBASIC19.5■□□□□ 0.71
BEST3Q8N1M1 AL355802.2-201ENST00000402069 882 ntBASIC19.5■□□□□ 0.71
BEST3Q8N1M1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.5■□□□□ 0.71
BEST3Q8N1M1 RNF146-206ENST00000480444 843 ntTSL 2 BASIC19.5■□□□□ 0.71
BEST3Q8N1M1 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
BEST3Q8N1M1 AC092053.2-201ENST00000640557 1818 ntBASIC19.5■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms