Protein–RNA interactions for Protein: Q8IXS2

CCDC65, Coiled-coil domain-containing protein 65, humanhuman

Predictions only

Length 484 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC65Q8IXS2 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CCDC65Q8IXS2 RARG-204ENST00000543726 1779 ntTSL 2 BASIC23.41■■□□□ 1.34
CCDC65Q8IXS2 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CCDC65Q8IXS2 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC23.41■■□□□ 1.34
CCDC65Q8IXS2 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.41■■□□□ 1.34
CCDC65Q8IXS2 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC23.41■■□□□ 1.34
CCDC65Q8IXS2 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 RANBP10-202ENST00000448631 2232 ntTSL 2 BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 FEM1AP4-201ENST00000443167 1987 ntBASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 STX5-203ENST00000394690 1568 ntTSL 5 BASIC23.4■■□□□ 1.34
CCDC65Q8IXS2 KRT87P-202ENST00000534226 1464 ntBASIC23.39■■□□□ 1.34
CCDC65Q8IXS2 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC65Q8IXS2 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC23.39■■□□□ 1.33
CCDC65Q8IXS2 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC23.39■■□□□ 1.33
CCDC65Q8IXS2 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC23.39■■□□□ 1.33
CCDC65Q8IXS2 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC23.39■■□□□ 1.33
CCDC65Q8IXS2 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC23.39■■□□□ 1.33
CCDC65Q8IXS2 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC23.39■■□□□ 1.33
CCDC65Q8IXS2 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 C7orf25-201ENST00000350427 2451 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC23.38■■□□□ 1.33
CCDC65Q8IXS2 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 AL137060.1-201ENST00000618151 2648 ntBASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 TERF1P2-201ENST00000583350 1212 ntBASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 RAB43-208ENST00000615093 783 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 ADCK2-201ENST00000072869 2377 ntAPPRIS P1 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC23.37■■□□□ 1.33
CCDC65Q8IXS2 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 GAS2L1-207ENST00000611648 2482 ntAPPRIS P1 TSL 2 BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC23.36■■□□□ 1.33
CCDC65Q8IXS2 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 PARN-205ENST00000539279 1557 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 YAP1-210ENST00000615667 5398 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 AL024507.2-201ENST00000606070 2574 ntBASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 CCDC92B-201ENST00000575506 885 ntBASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC23.35■■□□□ 1.33
CCDC65Q8IXS2 GLI4-201ENST00000340042 1341 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC65Q8IXS2 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC65Q8IXS2 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC65Q8IXS2 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC65Q8IXS2 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC65Q8IXS2 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC65Q8IXS2 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.34■■□□□ 1.33
CCDC65Q8IXS2 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC23.33■■□□□ 1.33
CCDC65Q8IXS2 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC23.33■■□□□ 1.33
CCDC65Q8IXS2 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC23.33■■□□□ 1.33
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms