Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 AP2S1-207ENST00000599990 829 ntAPPRIS ALT1 TSL 2 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.95■□□□□ 0.94
LRRK1Q38SD2 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 BMP1-204ENST00000397814 836 ntTSL 4 BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.94■□□□□ 0.94
LRRK1Q38SD2 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 RNF149-201ENST00000295317 2458 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.94■□□□□ 0.94
LRRK1Q38SD2 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 XBP1-202ENST00000344347 1131 ntTSL 5 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 METTL26-203ENST00000397664 604 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 MAP2K4P1-201ENST00000438453 1195 ntBASIC20.93■□□□□ 0.94
LRRK1Q38SD2 AC006970.2-201ENST00000450065 779 ntBASIC20.93■□□□□ 0.94
LRRK1Q38SD2 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 EMC9-206ENST00000560403 872 ntTSL 2 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 FGF8-207ENST00000618991 856 ntTSL 3 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 EP400NL-214ENST00000641289 2402 ntBASIC20.93■□□□□ 0.94
LRRK1Q38SD2 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
LRRK1Q38SD2 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 PDIA6-207ENST00000540494 2509 ntAPPRIS ALT1 TSL 2 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
LRRK1Q38SD2 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 FAM207A-201ENST00000291634 927 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 AC007322.1-201ENST00000426983 750 ntBASIC20.91■□□□□ 0.94
LRRK1Q38SD2 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 CD44-222ENST00000526025 1052 ntTSL 2 BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 TANGO2-212ENST00000434570 2180 ntTSL 2 BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
LRRK1Q38SD2 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 OIP5-201ENST00000220514 1236 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC20.9■□□□□ 0.94
LRRK1Q38SD2 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.94
LRRK1Q38SD2 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.89■□□□□ 0.94
LRRK1Q38SD2 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.89■□□□□ 0.94
LRRK1Q38SD2 PIAS2-203ENST00000545673 1590 ntTSL 2 BASIC20.89■□□□□ 0.94
LRRK1Q38SD2 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
LRRK1Q38SD2 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 PHB2-213ENST00000546111 858 ntTSL 2 BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 AC007216.1-201ENST00000570197 601 ntTSL 4 BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 AC018730.2-201ENST00000598623 443 ntTSL 5 BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 AC120498.10-201ENST00000621827 505 ntBASIC20.89■□□□□ 0.93
LRRK1Q38SD2 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 DEDD2-201ENST00000336034 1882 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
LRRK1Q38SD2 SLC7A5P1-201ENST00000568957 537 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.8 ms