Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC24.76■■□□□ 1.55
SHROOM1Q2M3G4 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 ZNF148-203ENST00000468369 1025 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 OR10C1-204ENST00000622521 1039 ntBASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 TBCB-214ENST00000629269 413 ntTSL 5 BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 BMP6-201ENST00000283147 2780 ntAPPRIS P1 TSL 1 (best) BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 C11orf96-202ENST00000528572 1834 ntBASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.75■■□□□ 1.55
SHROOM1Q2M3G4 FAM99A-202ENST00000538190 1989 ntBASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 GUK1-201ENST00000312726 1084 ntAPPRIS P3 TSL 1 (best) BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 NDUFB10-204ENST00000569148 628 ntTSL 2 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 KRT16P2-201ENST00000414673 1423 ntBASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 SLC25A24P1-201ENST00000411846 1569 ntTSL 5 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 OTUB1-211ENST00000543004 1647 ntTSL 5 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC24.74■■□□□ 1.55
SHROOM1Q2M3G4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 HENMT1-203ENST00000402983 1696 ntAPPRIS P2 TSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 BET1L-204ENST00000410108 637 ntTSL 3 BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 BX276092.2-201ENST00000417668 665 ntBASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 SERTAD4-AS1-201ENST00000437764 726 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 BEAN1-AS1-201ENST00000564618 533 ntTSL 4 BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 ETHE1-205ENST00000600651 1052 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 AC083880.1-201ENST00000608266 535 ntBASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 GPX1-204ENST00000620890 897 ntAPPRIS ALT2 TSL 5 BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.55
SHROOM1Q2M3G4 PTX4-203ENST00000447419 1516 ntAPPRIS ALT2 TSL 5 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 AC120498.10-201ENST00000621827 505 ntBASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC24.72■■□□□ 1.55
SHROOM1Q2M3G4 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 SPIRE1-203ENST00000410092 5533 ntAPPRIS P3 TSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 MTHFS-201ENST00000258874 907 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 AL121761.1-202ENST00000412571 415 ntTSL 2 BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 ELOVL2-AS1-201ENST00000456190 737 ntTSL 3 BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 MIR4758-201ENST00000577688 71 ntBASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC24.71■■□□□ 1.55
SHROOM1Q2M3G4 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC24.7■■□□□ 1.55
SHROOM1Q2M3G4 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC24.7■■□□□ 1.55
SHROOM1Q2M3G4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC24.7■■□□□ 1.54
SHROOM1Q2M3G4 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SHROOM1Q2M3G4 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SHROOM1Q2M3G4 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC24.7■■□□□ 1.54
SHROOM1Q2M3G4 RNA5SP413-201ENST00000516373 109 ntBASIC24.7■■□□□ 1.54
SHROOM1Q2M3G4 CHEK2P2-202ENST00000555186 864 ntTSL 2 BASIC24.7■■□□□ 1.54
Retrieved 100 of 98,524 protein–RNA pairs in 16.6 ms