Protein–RNA interactions for Protein: P98160

HSPG2, Basement membrane-specific heparan sulfate proteoglycan core protein, humanhuman

Predictions only

Length 4,391 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HSPG2P98160 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC13.27□□□□□ -0.29
HSPG2P98160 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC13.27□□□□□ -0.29
HSPG2P98160 AL591742.1-201ENST00000604433 565 ntBASIC13.27□□□□□ -0.29
HSPG2P98160 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HSPG2P98160 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
HSPG2P98160 ISOC2-201ENST00000085068 1122 ntTSL 2 BASIC13.27□□□□□ -0.29
HSPG2P98160 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 AC092368.3-202ENST00000574180 1591 ntBASIC13.27□□□□□ -0.29
HSPG2P98160 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
HSPG2P98160 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 MIR6786-201ENST00000616843 113 ntBASIC13.27□□□□□ -0.29
HSPG2P98160 CORO1B-210ENST00000627576 960 ntTSL 5 BASIC13.27□□□□□ -0.29
HSPG2P98160 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
HSPG2P98160 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 AC113347.1-201ENST00000413321 391 ntBASIC13.26□□□□□ -0.29
HSPG2P98160 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC13.26□□□□□ -0.29
HSPG2P98160 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC13.26□□□□□ -0.29
HSPG2P98160 ZNF837-201ENST00000427624 2038 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 ADAD2-202ENST00000315906 1995 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
HSPG2P98160 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 SERF2-207ENST00000409614 582 ntTSL 2 BASIC13.26□□□□□ -0.29
HSPG2P98160 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HSPG2P98160 SCPEP1-216ENST00000631024 444 ntTSL 5 BASIC13.26□□□□□ -0.29
HSPG2P98160 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
HSPG2P98160 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC13.26□□□□□ -0.29
HSPG2P98160 BAALC-AS1-206ENST00000521383 736 ntTSL 3 BASIC13.26□□□□□ -0.29
HSPG2P98160 CD44-222ENST00000526025 1052 ntTSL 2 BASIC13.26□□□□□ -0.29
HSPG2P98160 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
HSPG2P98160 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HSPG2P98160 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
HSPG2P98160 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC13.26□□□□□ -0.29
HSPG2P98160 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC13.25□□□□□ -0.29
HSPG2P98160 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC13.25□□□□□ -0.29
HSPG2P98160 RNF146-204ENST00000476956 884 ntTSL 2 BASIC13.25□□□□□ -0.29
HSPG2P98160 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC13.25□□□□□ -0.29
HSPG2P98160 APBA3-201ENST00000316757 2075 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 HDGFL2-210ENST00000621835 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC13.25□□□□□ -0.29
HSPG2P98160 AP004607.7-201ENST00000527152 1677 ntBASIC13.25□□□□□ -0.29
HSPG2P98160 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC13.25□□□□□ -0.29
HSPG2P98160 CACYBP-202ENST00000405362 1059 ntTSL 5 BASIC13.25□□□□□ -0.29
HSPG2P98160 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
HSPG2P98160 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC13.25□□□□□ -0.29
HSPG2P98160 LINC00654-202ENST00000589201 579 ntTSL 3 BASIC13.25□□□□□ -0.29
HSPG2P98160 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC13.25□□□□□ -0.29
HSPG2P98160 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 SLC27A4-202ENST00000372870 1557 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HSPG2P98160 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 ANAPC11-207ENST00000572639 578 ntAPPRIS P1 TSL 3 BASIC13.25□□□□□ -0.29
HSPG2P98160 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC13.25□□□□□ -0.29
HSPG2P98160 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC13.25□□□□□ -0.29
HSPG2P98160 ZIC2-201ENST00000376335 2983 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 BACE1-203ENST00000428381 1333 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC13.25□□□□□ -0.29
HSPG2P98160 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
HSPG2P98160 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC13.25□□□□□ -0.29
HSPG2P98160 C19orf66-209ENST00000591813 1481 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
HSPG2P98160 GRAP-204ENST00000573099 846 ntTSL 3 BASIC13.25□□□□□ -0.29
HSPG2P98160 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC13.24□□□□□ -0.29
HSPG2P98160 NIPSNAP2-201ENST00000322090 1999 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC13.24□□□□□ -0.29
HSPG2P98160 SIVA1-203ENST00000535554 1244 ntAPPRIS ALT1 TSL 2 BASIC13.24□□□□□ -0.29
HSPG2P98160 CFL2-205ENST00000555765 632 ntTSL 2 BASIC13.24□□□□□ -0.29
HSPG2P98160 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC13.24□□□□□ -0.29
HSPG2P98160 AC124016.1-201ENST00000609552 612 ntBASIC13.24□□□□□ -0.29
HSPG2P98160 KRT16P2-201ENST00000414673 1423 ntBASIC13.24□□□□□ -0.29
HSPG2P98160 RUNDC3A-202ENST00000426726 2048 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC13.24□□□□□ -0.29
HSPG2P98160 TERF1P1-201ENST00000311003 1181 ntBASIC13.24□□□□□ -0.29
HSPG2P98160 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC13.24□□□□□ -0.29
HSPG2P98160 AL589743.5-201ENST00000616611 1050 ntBASIC13.24□□□□□ -0.29
HSPG2P98160 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC13.24□□□□□ -0.29
HSPG2P98160 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC13.24□□□□□ -0.29
HSPG2P98160 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC13.24□□□□□ -0.29
HSPG2P98160 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC13.24□□□□□ -0.29
HSPG2P98160 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC13.24□□□□□ -0.29
HSPG2P98160 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC13.24□□□□□ -0.29
HSPG2P98160 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC13.23□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 18 ms