Protein–RNA interactions for Protein: P41002

CCNF, Cyclin-F, humanhuman

Predictions only

Length 786 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCNFP41002 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC21.18■□□□□ 0.98
CCNFP41002 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
CCNFP41002 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCNFP41002 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCNFP41002 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
CCNFP41002 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCNFP41002 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CCNFP41002 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC21.17■□□□□ 0.98
CCNFP41002 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 FXYD7-201ENST00000270310 712 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC21.17■□□□□ 0.98
CCNFP41002 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC21.17■□□□□ 0.98
CCNFP41002 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.17■□□□□ 0.98
CCNFP41002 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC21.17■□□□□ 0.98
CCNFP41002 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.17■□□□□ 0.98
CCNFP41002 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC21.17■□□□□ 0.98
CCNFP41002 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CCNFP41002 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
CCNFP41002 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC21.16■□□□□ 0.98
CCNFP41002 NEU4-202ENST00000391969 2526 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CCNFP41002 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC21.16■□□□□ 0.98
CCNFP41002 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC21.16■□□□□ 0.98
CCNFP41002 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.16■□□□□ 0.98
CCNFP41002 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
CCNFP41002 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC21.16■□□□□ 0.98
CCNFP41002 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.16■□□□□ 0.98
CCNFP41002 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.16■□□□□ 0.98
CCNFP41002 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
CCNFP41002 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CCNFP41002 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.15■□□□□ 0.98
CCNFP41002 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
CCNFP41002 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 EEF1D-246ENST00000532741 2387 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 LRRC75A-203ENST00000470794 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.15■□□□□ 0.98
CCNFP41002 TSPY26P-201ENST00000476365 1326 ntBASIC21.15■□□□□ 0.98
CCNFP41002 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 EBPL-204ENST00000378272 766 ntTSL 3 BASIC21.15■□□□□ 0.98
CCNFP41002 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.15■□□□□ 0.98
CCNFP41002 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC21.15■□□□□ 0.98
CCNFP41002 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CCNFP41002 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CCNFP41002 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.14■□□□□ 0.98
CCNFP41002 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCNFP41002 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
CCNFP41002 CEL-201ENST00000372080 2384 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
CCNFP41002 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNFP41002 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.14■□□□□ 0.97
CCNFP41002 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCNFP41002 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNFP41002 AC003102.1-202ENST00000563394 1796 ntBASIC21.14■□□□□ 0.97
CCNFP41002 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC21.14■□□□□ 0.97
CCNFP41002 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC21.14■□□□□ 0.97
CCNFP41002 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.14■□□□□ 0.97
CCNFP41002 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CCNFP41002 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
CCNFP41002 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNFP41002 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.14■□□□□ 0.97
CCNFP41002 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNFP41002 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNFP41002 AL034346.1-201ENST00000568244 1277 ntBASIC21.13■□□□□ 0.97
CCNFP41002 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNFP41002 FEM1AP1-201ENST00000431297 1995 ntBASIC21.13■□□□□ 0.97
CCNFP41002 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNFP41002 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
CCNFP41002 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC21.13■□□□□ 0.97
CCNFP41002 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 LINC01006-201ENST00000333319 2292 ntBASIC21.12■□□□□ 0.97
CCNFP41002 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC21.12■□□□□ 0.97
CCNFP41002 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.12■□□□□ 0.97
CCNFP41002 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
CCNFP41002 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.12■□□□□ 0.97
CCNFP41002 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.12■□□□□ 0.97
CCNFP41002 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.12■□□□□ 0.97
CCNFP41002 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC21.12■□□□□ 0.97
CCNFP41002 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC21.12■□□□□ 0.97
CCNFP41002 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
CCNFP41002 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC21.12■□□□□ 0.97
CCNFP41002 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 18.2 ms