Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
PTPN4P29074 AC010999.2-201ENST00000621974 596 ntTSL 2 BASIC21.04■□□□□ 0.96
PTPN4P29074 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC21.04■□□□□ 0.96
PTPN4P29074 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC21.04■□□□□ 0.96
PTPN4P29074 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.04■□□□□ 0.96
PTPN4P29074 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
PTPN4P29074 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
PTPN4P29074 NABP2-202ENST00000341463 1411 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
PTPN4P29074 TSPY26P-201ENST00000476365 1326 ntBASIC21.04■□□□□ 0.96
PTPN4P29074 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 CRTC1-203ENST00000594658 2384 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC21.03■□□□□ 0.96
PTPN4P29074 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 GLI3-203ENST00000437480 451 ntTSL 2 BASIC21.03■□□□□ 0.96
PTPN4P29074 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 E4F1-201ENST00000301727 2573 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC21.03■□□□□ 0.96
PTPN4P29074 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 ZIM2-208ENST00000629319 2253 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
PTPN4P29074 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
PTPN4P29074 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC21.03■□□□□ 0.96
PTPN4P29074 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC21.03■□□□□ 0.96
PTPN4P29074 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN4P29074 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC21.02■□□□□ 0.96
PTPN4P29074 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.02■□□□□ 0.96
PTPN4P29074 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.02■□□□□ 0.96
PTPN4P29074 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN4P29074 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC21.02■□□□□ 0.96
PTPN4P29074 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.02■□□□□ 0.96
PTPN4P29074 AC133637.1-201ENST00000624115 1537 ntBASIC21.02■□□□□ 0.96
PTPN4P29074 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.02■□□□□ 0.96
PTPN4P29074 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN4P29074 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC21.02■□□□□ 0.96
PTPN4P29074 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC21.02■□□□□ 0.96
PTPN4P29074 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
PTPN4P29074 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC21.02■□□□□ 0.95
PTPN4P29074 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.02■□□□□ 0.95
PTPN4P29074 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC21.02■□□□□ 0.95
PTPN4P29074 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.02■□□□□ 0.95
PTPN4P29074 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC21.01■□□□□ 0.95
PTPN4P29074 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PTPN4P29074 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC21.01■□□□□ 0.95
PTPN4P29074 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN4P29074 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.01■□□□□ 0.95
PTPN4P29074 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.01■□□□□ 0.95
PTPN4P29074 OBSL1-214ENST00000603926 5520 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN4P29074 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN4P29074 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN4P29074 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN4P29074 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.01■□□□□ 0.95
PTPN4P29074 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
PTPN4P29074 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC21■□□□□ 0.95
PTPN4P29074 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 FP325331.1-202ENST00000623531 1380 ntBASIC21■□□□□ 0.95
PTPN4P29074 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21■□□□□ 0.95
PTPN4P29074 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21■□□□□ 0.95
PTPN4P29074 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
PTPN4P29074 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.99■□□□□ 0.95
PTPN4P29074 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.99■□□□□ 0.95
PTPN4P29074 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
PTPN4P29074 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.99■□□□□ 0.95
PTPN4P29074 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC20.99■□□□□ 0.95
PTPN4P29074 AL499627.2-201ENST00000606283 725 ntBASIC20.99■□□□□ 0.95
PTPN4P29074 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.99■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms