Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 AL031432.3-201ENST00000607698 485 ntBASIC16.02■□□□□ 0.16
HLA-DMBP28068 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC16.02■□□□□ 0.16
HLA-DMBP28068 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DMBP28068 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC16.02■□□□□ 0.15
HLA-DMBP28068 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC16.02■□□□□ 0.15
HLA-DMBP28068 SDSL-201ENST00000345635 1397 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 MAPK9-203ENST00000393360 4326 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 STX10-202ENST00000343587 1128 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 AF213884.3-201ENST00000563833 479 ntBASIC16.01■□□□□ 0.15
HLA-DMBP28068 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 CKMT1B-207ENST00000441322 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC16.01■□□□□ 0.15
HLA-DMBP28068 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 AC073130.3-201ENST00000624389 2278 ntBASIC16.01■□□□□ 0.15
HLA-DMBP28068 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC16.01■□□□□ 0.15
HLA-DMBP28068 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC16■□□□□ 0.15
HLA-DMBP28068 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 NCKAP1-201ENST00000360982 4989 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 FAM3A-202ENST00000359889 1712 ntAPPRIS P1 TSL 2 BASIC16■□□□□ 0.15
HLA-DMBP28068 PALM-207ENST00000590161 2137 ntTSL 4 BASIC16■□□□□ 0.15
HLA-DMBP28068 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC16■□□□□ 0.15
HLA-DMBP28068 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 HYI-206ENST00000372434 1025 ntTSL 5 BASIC16■□□□□ 0.15
HLA-DMBP28068 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC16■□□□□ 0.15
HLA-DMBP28068 TNKS2-201ENST00000371627 6157 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC16■□□□□ 0.15
HLA-DMBP28068 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 SLC25A24-204ENST00000569674 2357 ntBASIC16■□□□□ 0.15
HLA-DMBP28068 FFAR1-201ENST00000246553 2311 ntAPPRIS P1 BASIC16■□□□□ 0.15
HLA-DMBP28068 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC16■□□□□ 0.15
HLA-DMBP28068 AP006587.3-201ENST00000525742 1516 ntBASIC15.99■□□□□ 0.15
HLA-DMBP28068 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC15.99■□□□□ 0.15
HLA-DMBP28068 CDK18-203ENST00000429964 1648 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DMBP28068 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HLA-DMBP28068 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC15.99■□□□□ 0.15
HLA-DMBP28068 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC15.99■□□□□ 0.15
HLA-DMBP28068 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC15.99■□□□□ 0.15
HLA-DMBP28068 HLA-C-201ENST00000376228 1536 ntAPPRIS P2 BASIC15.99■□□□□ 0.15
HLA-DMBP28068 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC15.99■□□□□ 0.15
HLA-DMBP28068 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 PXK-203ENST00000383715 1756 ntTSL 5 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DMBP28068 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DMBP28068 GUK1-205ENST00000366722 850 ntTSL 3 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 AP001330.3-201ENST00000520123 633 ntBASIC15.98■□□□□ 0.15
HLA-DMBP28068 SMUG1P1-201ENST00000590640 811 ntBASIC15.98■□□□□ 0.15
HLA-DMBP28068 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DMBP28068 AL136967.2-201ENST00000623968 743 ntBASIC15.98■□□□□ 0.15
HLA-DMBP28068 MED17-221ENST00000639724 2317 ntTSL 5 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DMBP28068 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HLA-DMBP28068 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC15.98■□□□□ 0.15
HLA-DMBP28068 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
HLA-DMBP28068 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC15.97■□□□□ 0.15
HLA-DMBP28068 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC15.97■□□□□ 0.15
HLA-DMBP28068 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC15.97■□□□□ 0.15
HLA-DMBP28068 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC15.97■□□□□ 0.15
HLA-DMBP28068 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC15.97■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms