Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
HMGB1P09429 YBX1P1-201ENST00000445822 960 ntBASIC24.91■■□□□ 1.58
HMGB1P09429 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC24.91■■□□□ 1.58
HMGB1P09429 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC24.91■■□□□ 1.58
HMGB1P09429 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC24.91■■□□□ 1.58
HMGB1P09429 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC24.91■■□□□ 1.58
HMGB1P09429 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC24.91■■□□□ 1.58
HMGB1P09429 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC24.91■■□□□ 1.58
HMGB1P09429 PALM-208ENST00000592155 2272 ntTSL 4 BASIC24.91■■□□□ 1.58
HMGB1P09429 KRT87P-202ENST00000534226 1464 ntBASIC24.9■■□□□ 1.58
HMGB1P09429 AC005229.4-201ENST00000610085 2198 ntBASIC24.9■■□□□ 1.58
HMGB1P09429 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC24.9■■□□□ 1.58
HMGB1P09429 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGB1P09429 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC24.9■■□□□ 1.58
HMGB1P09429 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC24.9■■□□□ 1.58
HMGB1P09429 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGB1P09429 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGB1P09429 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGB1P09429 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC24.9■■□□□ 1.58
HMGB1P09429 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.58
HMGB1P09429 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC24.89■■□□□ 1.58
HMGB1P09429 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC24.89■■□□□ 1.58
HMGB1P09429 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC24.89■■□□□ 1.58
HMGB1P09429 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.57
HMGB1P09429 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC24.89■■□□□ 1.57
HMGB1P09429 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC24.89■■□□□ 1.57
HMGB1P09429 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC24.89■■□□□ 1.57
HMGB1P09429 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC24.88■■□□□ 1.57
HMGB1P09429 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 ASMT-202ENST00000381233 989 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 EFS-203ENST00000429593 2610 ntTSL 2 BASIC24.88■■□□□ 1.57
HMGB1P09429 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC24.88■■□□□ 1.57
HMGB1P09429 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HMGB1P09429 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HMGB1P09429 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HMGB1P09429 NDUFS3-201ENST00000263774 958 ntAPPRIS P1 TSL 1 (best) BASIC24.87■■□□□ 1.57
HMGB1P09429 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC24.87■■□□□ 1.57
HMGB1P09429 SP2-202ENST00000613139 908 ntTSL 5 BASIC24.87■■□□□ 1.57
HMGB1P09429 AL049796.1-201ENST00000565336 1766 ntBASIC24.87■■□□□ 1.57
HMGB1P09429 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC24.87■■□□□ 1.57
HMGB1P09429 EML2-201ENST00000245925 2264 ntAPPRIS P3 TSL 1 (best) BASIC24.87■■□□□ 1.57
HMGB1P09429 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC24.86■■□□□ 1.57
HMGB1P09429 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC24.86■■□□□ 1.57
HMGB1P09429 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC24.86■■□□□ 1.57
HMGB1P09429 AF106564.1-201ENST00000607058 2553 ntBASIC24.86■■□□□ 1.57
HMGB1P09429 DNAJB11-202ENST00000439351 2398 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
HMGB1P09429 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
HMGB1P09429 RNF208-202ENST00000392827 1135 ntAPPRIS P1 TSL 5 BASIC24.86■■□□□ 1.57
HMGB1P09429 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC24.86■■□□□ 1.57
HMGB1P09429 TSPAN11-202ENST00000535215 988 ntTSL 2 BASIC24.86■■□□□ 1.57
HMGB1P09429 TERF1P2-201ENST00000583350 1212 ntBASIC24.86■■□□□ 1.57
HMGB1P09429 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC24.86■■□□□ 1.57
HMGB1P09429 FP565260.3-201ENST00000612610 1162 ntAPPRIS P5 TSL 1 (best) BASIC24.86■■□□□ 1.57
HMGB1P09429 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC24.86■■□□□ 1.57
HMGB1P09429 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC24.85■■□□□ 1.57
HMGB1P09429 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC24.85■■□□□ 1.57
HMGB1P09429 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC24.85■■□□□ 1.57
HMGB1P09429 AC011446.1-201ENST00000591825 458 ntTSL 2 BASIC24.85■■□□□ 1.57
HMGB1P09429 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 BIN1-202ENST00000316724 2693 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC24.85■■□□□ 1.57
HMGB1P09429 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC24.85■■□□□ 1.57
HMGB1P09429 EPHX3-201ENST00000221730 1822 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
HMGB1P09429 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
HMGB1P09429 GUK1-205ENST00000366722 850 ntTSL 3 BASIC24.84■■□□□ 1.57
HMGB1P09429 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
HMGB1P09429 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC24.84■■□□□ 1.57
HMGB1P09429 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC24.84■■□□□ 1.57
HMGB1P09429 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC24.84■■□□□ 1.57
HMGB1P09429 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC24.84■■□□□ 1.57
HMGB1P09429 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC24.83■■□□□ 1.57
HMGB1P09429 C10orf55-202ENST00000412307 2360 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
HMGB1P09429 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
HMGB1P09429 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC24.83■■□□□ 1.57
HMGB1P09429 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC24.83■■□□□ 1.57
HMGB1P09429 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
HMGB1P09429 CERS4-208ENST00000559336 1515 ntTSL 1 (best) BASIC24.83■■□□□ 1.57
HMGB1P09429 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC24.83■■□□□ 1.57
HMGB1P09429 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC24.83■■□□□ 1.57
HMGB1P09429 LGR4-203ENST00000480977 492 ntTSL 2 BASIC24.83■■□□□ 1.57
HMGB1P09429 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC24.83■■□□□ 1.57
HMGB1P09429 RAB43-208ENST00000615093 783 ntTSL 5 BASIC24.83■■□□□ 1.57
HMGB1P09429 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC24.83■■□□□ 1.57
HMGB1P09429 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC24.83■■□□□ 1.57
HMGB1P09429 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC24.83■■□□□ 1.56
HMGB1P09429 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC24.83■■□□□ 1.56
HMGB1P09429 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC24.82■■□□□ 1.56
HMGB1P09429 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC24.82■■□□□ 1.56
HMGB1P09429 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC24.82■■□□□ 1.56
Retrieved 100 of 98,524 protein–RNA pairs in 29.6 ms