Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 RPS2P55-201ENST00000397318 883 ntBASIC30.17■■■□□ 2.42
NPHP4O75161 AC107956.1-201ENST00000494359 873 ntBASIC30.17■■■□□ 2.42
NPHP4O75161 AC097493.4-201ENST00000641197 219 ntBASIC30.17■■■□□ 2.42
NPHP4O75161 FAM220A-201ENST00000313324 2214 ntTSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC30.17■■■□□ 2.42
NPHP4O75161 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC30.16■■■□□ 2.42
NPHP4O75161 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP4O75161 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC30.16■■■□□ 2.42
NPHP4O75161 PAQR6-205ENST00000368270 1765 ntTSL 1 (best) BASIC30.16■■■□□ 2.42
NPHP4O75161 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP4O75161 MSX2-201ENST00000239243 2241 ntAPPRIS P1 TSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP4O75161 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC30.15■■■□□ 2.42
NPHP4O75161 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC30.15■■■□□ 2.42
NPHP4O75161 FAM21FP-204ENST00000608637 956 ntBASIC30.15■■■□□ 2.42
NPHP4O75161 AC100791.3-201ENST00000617619 330 ntBASIC30.15■■■□□ 2.42
NPHP4O75161 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP4O75161 TRIM54-201ENST00000296098 2027 ntTSL 1 (best) BASIC30.15■■■□□ 2.42
NPHP4O75161 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC30.14■■■□□ 2.42
NPHP4O75161 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC30.14■■■□□ 2.42
NPHP4O75161 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC30.14■■■□□ 2.42
NPHP4O75161 PRKACA-209ENST00000590853 1101 ntTSL 5 BASIC30.14■■■□□ 2.42
NPHP4O75161 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC30.14■■■□□ 2.42
NPHP4O75161 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC30.14■■■□□ 2.42
NPHP4O75161 POU2F2-208ENST00000529952 1716 ntAPPRIS ALT2 TSL 1 (best) BASIC30.14■■■□□ 2.41
NPHP4O75161 C2orf50-202ENST00000405022 980 ntAPPRIS P1 TSL 2 BASIC30.13■■■□□ 2.41
NPHP4O75161 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP4O75161 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP4O75161 ICAM2-207ENST00000579687 1154 ntAPPRIS P1 TSL 3 BASIC30.13■■■□□ 2.41
NPHP4O75161 MAP3K14-AS1-202ENST00000585351 893 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP4O75161 KLF2-202ENST00000592003 564 ntTSL 3 BASIC30.13■■■□□ 2.41
NPHP4O75161 CD247-201ENST00000362089 1609 ntAPPRIS P4 TSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP4O75161 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP4O75161 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP4O75161 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC30.13■■■□□ 2.41
NPHP4O75161 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC30.13■■■□□ 2.41
NPHP4O75161 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC30.13■■■□□ 2.41
NPHP4O75161 DHDH-203ENST00000522614 776 ntTSL 5 BASIC30.13■■■□□ 2.41
NPHP4O75161 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC30.13■■■□□ 2.41
NPHP4O75161 KRT17P2-201ENST00000300992 1314 ntBASIC30.13■■■□□ 2.41
NPHP4O75161 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC30.13■■■□□ 2.41
NPHP4O75161 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC30.12■■■□□ 2.41
NPHP4O75161 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC30.12■■■□□ 2.41
NPHP4O75161 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC30.12■■■□□ 2.41
NPHP4O75161 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC30.12■■■□□ 2.41
NPHP4O75161 OR2A1-AS1-207ENST00000486094 819 ntBASIC30.12■■■□□ 2.41
NPHP4O75161 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC30.12■■■□□ 2.41
NPHP4O75161 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC30.12■■■□□ 2.41
NPHP4O75161 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC30.12■■■□□ 2.41
NPHP4O75161 C20orf204-205ENST00000636176 961 ntAPPRIS P5 TSL 5 BASIC30.12■■■□□ 2.41
NPHP4O75161 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC30.11■■■□□ 2.41
NPHP4O75161 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC30.11■■■□□ 2.41
NPHP4O75161 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP4O75161 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC30.11■■■□□ 2.41
NPHP4O75161 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP4O75161 ISG20-202ENST00000379224 540 ntTSL 3 BASIC30.11■■■□□ 2.41
NPHP4O75161 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP4O75161 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC30.11■■■□□ 2.41
NPHP4O75161 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC30.11■■■□□ 2.41
NPHP4O75161 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC30.1■■■□□ 2.41
NPHP4O75161 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP4O75161 AC004812.2-201ENST00000611079 2094 ntBASIC30.1■■■□□ 2.41
NPHP4O75161 DDX31-206ENST00000480876 1333 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP4O75161 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC30.1■■■□□ 2.41
NPHP4O75161 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC30.1■■■□□ 2.41
NPHP4O75161 TSPY15P-201ENST00000457163 923 ntBASIC30.1■■■□□ 2.41
NPHP4O75161 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC30.1■■■□□ 2.41
NPHP4O75161 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC30.1■■■□□ 2.41
NPHP4O75161 AC010646.1-201ENST00000594059 515 ntAPPRIS P1 TSL 4 BASIC30.1■■■□□ 2.41
NPHP4O75161 AL589743.5-201ENST00000616611 1050 ntBASIC30.1■■■□□ 2.41
NPHP4O75161 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC30.09■■■□□ 2.41
NPHP4O75161 AL049637.2-201ENST00000641778 930 ntBASIC30.09■■■□□ 2.41
NPHP4O75161 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP4O75161 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC30.09■■■□□ 2.41
NPHP4O75161 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC30.09■■■□□ 2.41
NPHP4O75161 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP4O75161 TMEM53-205ENST00000372244 1472 ntTSL 2 BASIC30.09■■■□□ 2.41
NPHP4O75161 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC30.09■■■□□ 2.41
NPHP4O75161 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC30.09■■■□□ 2.41
NPHP4O75161 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC30.09■■■□□ 2.41
NPHP4O75161 MRPL40-201ENST00000333130 1387 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 CUTC-202ENST00000370476 1346 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 POM121L13P-201ENST00000422362 380 ntBASIC30.08■■■□□ 2.41
NPHP4O75161 ANK1-211ENST00000522231 1060 ntTSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 ANK1-212ENST00000522543 1160 ntTSL 2 BASIC30.08■■■□□ 2.41
NPHP4O75161 AC061975.6-201ENST00000579045 1553 ntBASIC30.08■■■□□ 2.41
NPHP4O75161 POU3F3-201ENST00000361360 3064 ntAPPRIS P1 BASIC30.08■■■□□ 2.41
NPHP4O75161 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC30.08■■■□□ 2.41
NPHP4O75161 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC30.07■■■□□ 2.41
NPHP4O75161 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
NPHP4O75161 IRAK3-203ENST00000545837 1579 ntTSL 1 (best) BASIC30.07■■■□□ 2.4
Retrieved 100 of 98,524 protein–RNA pairs in 17 ms