Protein–RNA interactions for Protein: O75127

PTCD1, Pentatricopeptide repeat-containing protein 1, mitochondrial, humanhuman

Known RBP Predictions only

Length 700 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD1O75127 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC27.22■■□□□ 1.95
PTCD1O75127 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 ANKRD65-202ENST00000442470 876 ntTSL 2 BASIC27.22■■□□□ 1.95
PTCD1O75127 OR2A1-AS1-201ENST00000462305 773 ntBASIC27.22■■□□□ 1.95
PTCD1O75127 AC004889.1-204ENST00000474656 773 ntTSL 3 BASIC27.22■■□□□ 1.95
PTCD1O75127 AL162412.1-201ENST00000567129 965 ntBASIC27.22■■□□□ 1.95
PTCD1O75127 PTMS-207ENST00000619580 1150 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC27.22■■□□□ 1.95
PTCD1O75127 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC27.22■■□□□ 1.95
PTCD1O75127 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC27.22■■□□□ 1.95
PTCD1O75127 CCDC96-201ENST00000310085 2091 ntAPPRIS P1 BASIC27.21■■□□□ 1.95
PTCD1O75127 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PTCD1O75127 CRTAC1-202ENST00000370591 2348 ntAPPRIS P2 TSL 5 BASIC27.21■■□□□ 1.95
PTCD1O75127 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC27.21■■□□□ 1.95
PTCD1O75127 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PTCD1O75127 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC27.21■■□□□ 1.95
PTCD1O75127 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC27.21■■□□□ 1.95
PTCD1O75127 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC27.21■■□□□ 1.95
PTCD1O75127 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC27.21■■□□□ 1.95
PTCD1O75127 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC27.21■■□□□ 1.95
PTCD1O75127 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC27.21■■□□□ 1.95
PTCD1O75127 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC27.2■■□□□ 1.95
PTCD1O75127 AC007285.1-201ENST00000422239 893 ntTSL 5 BASIC27.2■■□□□ 1.94
PTCD1O75127 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC27.2■■□□□ 1.94
PTCD1O75127 ADM-205ENST00000528544 586 ntTSL 2 BASIC27.2■■□□□ 1.94
PTCD1O75127 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC27.2■■□□□ 1.94
PTCD1O75127 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC27.2■■□□□ 1.94
PTCD1O75127 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC27.2■■□□□ 1.94
PTCD1O75127 AC243732.1-201ENST00000612648 864 ntBASIC27.2■■□□□ 1.94
PTCD1O75127 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC27.19■■□□□ 1.94
PTCD1O75127 DUX4-204ENST00000569241 1574 ntAPPRIS P2 TSL 1 (best) BASIC27.19■■□□□ 1.94
PTCD1O75127 PKM-204ENST00000449901 2526 ntTSL 2 BASIC27.19■■□□□ 1.94
PTCD1O75127 GGTLC1-201ENST00000278765 974 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PTCD1O75127 NREP-209ENST00000455559 698 ntAPPRIS P1 TSL 4 BASIC27.19■■□□□ 1.94
PTCD1O75127 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC27.19■■□□□ 1.94
PTCD1O75127 CASK-201ENST00000378154 2494 ntTSL 5 BASIC27.19■■□□□ 1.94
PTCD1O75127 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PTCD1O75127 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC27.19■■□□□ 1.94
PTCD1O75127 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC27.19■■□□□ 1.94
PTCD1O75127 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC27.18■■□□□ 1.94
PTCD1O75127 AC132008.2-203ENST00000418868 1552 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
PTCD1O75127 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC27.18■■□□□ 1.94
PTCD1O75127 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
PTCD1O75127 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC27.18■■□□□ 1.94
PTCD1O75127 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC27.18■■□□□ 1.94
PTCD1O75127 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC27.18■■□□□ 1.94
PTCD1O75127 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC27.18■■□□□ 1.94
PTCD1O75127 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC27.18■■□□□ 1.94
PTCD1O75127 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC27.18■■□□□ 1.94
PTCD1O75127 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
PTCD1O75127 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC27.17■■□□□ 1.94
PTCD1O75127 GAS7-202ENST00000396115 929 ntTSL 5 BASIC27.17■■□□□ 1.94
PTCD1O75127 GNAS-AS1-201ENST00000424094 1156 ntTSL 1 (best) BASIC27.17■■□□□ 1.94
PTCD1O75127 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC27.17■■□□□ 1.94
PTCD1O75127 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC27.17■■□□□ 1.94
PTCD1O75127 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PTCD1O75127 EPHX3-202ENST00000435261 1771 ntAPPRIS P1 TSL 1 (best) BASIC27.17■■□□□ 1.94
PTCD1O75127 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC27.17■■□□□ 1.94
PTCD1O75127 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC27.16■■□□□ 1.94
PTCD1O75127 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC27.16■■□□□ 1.94
PTCD1O75127 FAM72A-203ENST00000367129 676 ntTSL 3 BASIC27.16■■□□□ 1.94
PTCD1O75127 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC27.16■■□□□ 1.94
PTCD1O75127 PBX1-209ENST00000485769 834 ntTSL 2 BASIC27.16■■□□□ 1.94
PTCD1O75127 MMAB-206ENST00000540016 945 ntTSL 3 BASIC27.16■■□□□ 1.94
PTCD1O75127 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC27.16■■□□□ 1.94
PTCD1O75127 AC006058.3-201ENST00000606217 1069 ntBASIC27.16■■□□□ 1.94
PTCD1O75127 INO80E-214ENST00000620599 515 ntTSL 2 BASIC27.16■■□□□ 1.94
PTCD1O75127 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PTCD1O75127 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PTCD1O75127 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PTCD1O75127 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PTCD1O75127 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PTCD1O75127 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
PTCD1O75127 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
PTCD1O75127 RARRES2-202ENST00000466675 1618 ntAPPRIS P1 TSL 2 BASIC27.16■■□□□ 1.94
PTCD1O75127 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC27.16■■□□□ 1.94
PTCD1O75127 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
PTCD1O75127 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC27.15■■□□□ 1.94
PTCD1O75127 TRA2B-203ENST00000382191 976 ntTSL 2 BASIC27.15■■□□□ 1.94
PTCD1O75127 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
PTCD1O75127 AL359182.2-201ENST00000457720 606 ntTSL 3 BASIC27.15■■□□□ 1.94
PTCD1O75127 LINC01962-201ENST00000513771 411 ntTSL 2 BASIC27.15■■□□□ 1.94
PTCD1O75127 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC27.15■■□□□ 1.94
PTCD1O75127 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC27.14■■□□□ 1.94
PTCD1O75127 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC27.14■■□□□ 1.94
PTCD1O75127 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.94
PTCD1O75127 GCSHP5-201ENST00000443090 522 ntBASIC27.14■■□□□ 1.94
PTCD1O75127 AC018553.2-201ENST00000637770 1064 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
PTCD1O75127 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
PTCD1O75127 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC27.14■■□□□ 1.93
PTCD1O75127 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC27.14■■□□□ 1.93
PTCD1O75127 PRAF2-202ENST00000553851 1334 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
PTCD1O75127 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC27.13■■□□□ 1.93
PTCD1O75127 AL355472.2-201ENST00000422958 438 ntBASIC27.13■■□□□ 1.93
PTCD1O75127 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC27.13■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.3 ms