Protein–RNA interactions for Protein: O60663

LMX1B, LIM homeobox transcription factor 1-beta, humanhuman

Predictions only

Length 402 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1BO60663 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC18.51■□□□□ 0.55
LMX1BO60663 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
LMX1BO60663 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1BO60663 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 GCH1-202ENST00000395514 1977 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
LMX1BO60663 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1BO60663 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC18.5■□□□□ 0.55
LMX1BO60663 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 FAM219A-202ENST00000379078 770 ntTSL 3 BASIC18.5■□□□□ 0.55
LMX1BO60663 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1BO60663 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 GXYLT1P2-201ENST00000433312 1230 ntBASIC18.5■□□□□ 0.55
LMX1BO60663 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
LMX1BO60663 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1BO60663 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1BO60663 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC18.5■□□□□ 0.55
LMX1BO60663 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC18.5■□□□□ 0.55
LMX1BO60663 DCTD-202ENST00000438320 1972 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
LMX1BO60663 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC18.49■□□□□ 0.55
LMX1BO60663 CDIPT-210ENST00000570016 1346 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LMX1BO60663 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC18.49■□□□□ 0.55
LMX1BO60663 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.49■□□□□ 0.55
LMX1BO60663 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
LMX1BO60663 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 AC004911.1-201ENST00000416316 871 ntBASIC18.49■□□□□ 0.55
LMX1BO60663 IGHV3-19-201ENST00000521488 291 ntBASIC18.49■□□□□ 0.55
LMX1BO60663 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.49■□□□□ 0.55
LMX1BO60663 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC18.49■□□□□ 0.55
LMX1BO60663 NEDD4L-225ENST00000589054 1033 ntTSL 3 BASIC18.49■□□□□ 0.55
LMX1BO60663 AC092437.1-201ENST00000624794 1048 ntBASIC18.49■□□□□ 0.55
LMX1BO60663 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 JPT1-206ENST00000476258 2289 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC18.49■□□□□ 0.55
LMX1BO60663 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
LMX1BO60663 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
LMX1BO60663 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.49■□□□□ 0.55
LMX1BO60663 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
LMX1BO60663 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1BO60663 MIR572-201ENST00000384983 95 ntBASIC18.48■□□□□ 0.55
LMX1BO60663 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.48■□□□□ 0.55
LMX1BO60663 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC18.48■□□□□ 0.55
LMX1BO60663 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC18.48■□□□□ 0.55
LMX1BO60663 AL354811.1-201ENST00000610286 706 ntBASIC18.48■□□□□ 0.55
LMX1BO60663 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LMX1BO60663 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC18.48■□□□□ 0.55
LMX1BO60663 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1BO60663 AL157384.1-201ENST00000445995 2473 ntBASIC18.48■□□□□ 0.55
LMX1BO60663 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1BO60663 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.48■□□□□ 0.55
LMX1BO60663 ATAD3A-202ENST00000378755 2612 ntTSL 2 BASIC18.48■□□□□ 0.55
LMX1BO60663 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.48■□□□□ 0.55
LMX1BO60663 PILRB-207ENST00000448382 2314 ntTSL 2 BASIC18.48■□□□□ 0.55
LMX1BO60663 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 AP004607.7-201ENST00000527152 1677 ntBASIC18.47■□□□□ 0.55
LMX1BO60663 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC18.47■□□□□ 0.55
LMX1BO60663 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC18.47■□□□□ 0.55
LMX1BO60663 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC18.47■□□□□ 0.55
LMX1BO60663 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.47■□□□□ 0.55
LMX1BO60663 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.47■□□□□ 0.55
LMX1BO60663 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 AC012414.1-201ENST00000556676 535 ntBASIC18.47■□□□□ 0.55
LMX1BO60663 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC18.47■□□□□ 0.55
LMX1BO60663 AC003102.1-202ENST00000563394 1796 ntBASIC18.47■□□□□ 0.55
LMX1BO60663 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC18.47■□□□□ 0.55
LMX1BO60663 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.46■□□□□ 0.55
LMX1BO60663 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
LMX1BO60663 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC18.46■□□□□ 0.55
LMX1BO60663 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.46■□□□□ 0.55
LMX1BO60663 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC18.46■□□□□ 0.55
LMX1BO60663 YJEFN3-203ENST00000514277 995 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms