Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 NAA20-201ENST00000310450 920 ntTSL 2 BASIC21.56■■□□□ 1.04
CBX4O00257 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.56■■□□□ 1.04
CBX4O00257 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.56■■□□□ 1.04
CBX4O00257 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC21.56■■□□□ 1.04
CBX4O00257 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.56■■□□□ 1.04
CBX4O00257 UBE2DNL-204ENST00000602536 740 ntBASIC21.56■■□□□ 1.04
CBX4O00257 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.56■■□□□ 1.04
CBX4O00257 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 KHDRBS2-201ENST00000281156 2332 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
CBX4O00257 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 CYB5R4-201ENST00000369679 768 ntTSL 3 BASIC21.55■■□□□ 1.04
CBX4O00257 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 LINC01816-201ENST00000414141 662 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 KRT18P11-201ENST00000435214 1283 ntBASIC21.55■■□□□ 1.04
CBX4O00257 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC21.55■■□□□ 1.04
CBX4O00257 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC21.55■■□□□ 1.04
CBX4O00257 AC080038.1-201ENST00000611274 1154 ntBASIC21.55■■□□□ 1.04
CBX4O00257 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC21.55■■□□□ 1.04
CBX4O00257 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 GOLGA2P6-201ENST00000340929 2049 ntBASIC21.55■■□□□ 1.04
CBX4O00257 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
CBX4O00257 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.55■■□□□ 1.04
CBX4O00257 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CBX4O00257 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 LETM1-201ENST00000302787 5462 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.54■■□□□ 1.04
CBX4O00257 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.54■■□□□ 1.04
CBX4O00257 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC21.54■■□□□ 1.04
CBX4O00257 AC008175.2-201ENST00000612840 297 ntBASIC21.54■■□□□ 1.04
CBX4O00257 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CBX4O00257 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC21.53■■□□□ 1.04
CBX4O00257 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.53■■□□□ 1.04
CBX4O00257 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CBX4O00257 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.53■■□□□ 1.04
CBX4O00257 HAS1-203ENST00000594621 760 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 BID-214ENST00000617586 542 ntTSL 5 BASIC21.53■■□□□ 1.04
CBX4O00257 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
CBX4O00257 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.53■■□□□ 1.04
CBX4O00257 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
CBX4O00257 CDC14A-203ENST00000370124 1883 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.53■■□□□ 1.04
CBX4O00257 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
CBX4O00257 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.52■■□□□ 1.04
CBX4O00257 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.52■■□□□ 1.04
CBX4O00257 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 PEX5-204ENST00000412720 2105 ntTSL 2 BASIC21.52■■□□□ 1.04
CBX4O00257 CACYBP-201ENST00000367679 2766 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CBX4O00257 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC21.52■■□□□ 1.04
CBX4O00257 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CBX4O00257 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC21.52■■□□□ 1.04
CBX4O00257 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC21.52■■□□□ 1.04
CBX4O00257 KRT18P20-201ENST00000548986 1279 ntBASIC21.52■■□□□ 1.04
CBX4O00257 SLC7A5P2-201ENST00000553010 536 ntBASIC21.52■■□□□ 1.04
CBX4O00257 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.52■■□□□ 1.04
CBX4O00257 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.52■■□□□ 1.04
CBX4O00257 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC21.52■■□□□ 1.04
CBX4O00257 FBXW4P1-201ENST00000426721 2239 ntBASIC21.52■■□□□ 1.04
CBX4O00257 MESP1-201ENST00000300057 2369 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
CBX4O00257 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.52■■□□□ 1.03
CBX4O00257 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.51■■□□□ 1.03
CBX4O00257 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.51■■□□□ 1.03
CBX4O00257 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 YBEY-204ENST00000397692 433 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
CBX4O00257 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.51■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms