Protein–RNA interactions for Protein: O00203

AP3B1, AP-3 complex subunit beta-1, humanhuman

Predictions only

Length 1,094 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP3B1O00203 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 CNNM4-201ENST00000377075 4800 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 GNA11-201ENST00000078429 4147 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC21.3■■□□□ 1
AP3B1O00203 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC21.3■■□□□ 1
AP3B1O00203 CDC37L1-202ENST00000381858 1244 ntTSL 5 BASIC21.3■■□□□ 1
AP3B1O00203 AL355877.1-204ENST00000451482 1078 ntTSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 SUDS3P1-201ENST00000505831 966 ntBASIC21.3■■□□□ 1
AP3B1O00203 LINC01574-201ENST00000512115 560 ntTSL 2 BASIC21.3■■□□□ 1
AP3B1O00203 TMEM179B-205ENST00000533861 797 ntTSL 5 BASIC21.3■■□□□ 1
AP3B1O00203 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC21.3■■□□□ 1
AP3B1O00203 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.3■■□□□ 1
AP3B1O00203 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 ALX3-201ENST00000369792 1859 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 SCLY-201ENST00000254663 2562 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
AP3B1O00203 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
AP3B1O00203 LINC00454-202ENST00000430978 1327 ntTSL 5 BASIC21.29■■□□□ 1
AP3B1O00203 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC21.29■■□□□ 1
AP3B1O00203 BASP1-201ENST00000322611 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
AP3B1O00203 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
AP3B1O00203 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
AP3B1O00203 POLR2H-204ENST00000438240 994 ntTSL 3 BASIC21.29■■□□□ 1
AP3B1O00203 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.29■■□□□ 1
AP3B1O00203 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC21.29■■□□□ 1
AP3B1O00203 ARHGAP5-203ENST00000396582 5786 ntTSL 1 (best) BASIC21.29■■□□□ 1
AP3B1O00203 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.29■■□□□ 1
AP3B1O00203 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC21.29■■□□□ 1
AP3B1O00203 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
AP3B1O00203 ITPKC-201ENST00000263370 3385 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.28■■□□□ 1
AP3B1O00203 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC21.28■■□□□ 1
AP3B1O00203 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC21.28■■□□□ 1
AP3B1O00203 AL358852.1-201ENST00000623174 1268 ntBASIC21.28■■□□□ 1
AP3B1O00203 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 FAM171A2-201ENST00000293443 3160 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC21.28■■□□□ 1
AP3B1O00203 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.28■■□□□ 1
AP3B1O00203 TRIM28-201ENST00000253024 2960 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
AP3B1O00203 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC21.27■■□□□ 1
AP3B1O00203 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC21.27■■□□□ 1
AP3B1O00203 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
AP3B1O00203 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
AP3B1O00203 VPS13B-204ENST00000441350 1626 ntTSL 1 (best) BASIC21.27■■□□□ 1
AP3B1O00203 LRRC45-201ENST00000306688 2701 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
AP3B1O00203 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
AP3B1O00203 WWTR1-AS1-202ENST00000479752 1700 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
AP3B1O00203 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC21.26■□□□□ 0.99
AP3B1O00203 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC21.26■□□□□ 0.99
AP3B1O00203 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC21.26■□□□□ 0.99
AP3B1O00203 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP3B1O00203 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
AP3B1O00203 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.26■□□□□ 0.99
AP3B1O00203 CPNE2-201ENST00000290776 2645 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
AP3B1O00203 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.26■□□□□ 0.99
AP3B1O00203 AF106564.1-201ENST00000607058 2553 ntBASIC21.26■□□□□ 0.99
AP3B1O00203 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
AP3B1O00203 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC21.26■□□□□ 0.99
AP3B1O00203 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP3B1O00203 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.25■□□□□ 0.99
AP3B1O00203 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.25■□□□□ 0.99
AP3B1O00203 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP3B1O00203 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP3B1O00203 RNF146-206ENST00000480444 843 ntTSL 2 BASIC21.25■□□□□ 0.99
AP3B1O00203 SIRT3-215ENST00000532956 1235 ntTSL 2 BASIC21.25■□□□□ 0.99
AP3B1O00203 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
AP3B1O00203 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC21.25■□□□□ 0.99
AP3B1O00203 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
AP3B1O00203 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.25■□□□□ 0.99
AP3B1O00203 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC21.25■□□□□ 0.99
AP3B1O00203 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC21.25■□□□□ 0.99
AP3B1O00203 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP3B1O00203 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC21.25■□□□□ 0.99
AP3B1O00203 BICRA-204ENST00000614245 5697 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
AP3B1O00203 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 RARG-204ENST00000543726 1779 ntTSL 2 BASIC21.24■□□□□ 0.99
AP3B1O00203 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC21.24■□□□□ 0.99
AP3B1O00203 AC142381.2-201ENST00000566120 298 ntBASIC21.24■□□□□ 0.99
AP3B1O00203 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC21.24■□□□□ 0.99
AP3B1O00203 TRAF4-217ENST00000618771 543 ntTSL 5 BASIC21.24■□□□□ 0.99
AP3B1O00203 CPT2-209ENST00000636935 803 ntTSL 5 BASIC21.24■□□□□ 0.99
AP3B1O00203 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.24■□□□□ 0.99
AP3B1O00203 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 HAND1-201ENST00000231121 1738 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC21.24■□□□□ 0.99
AP3B1O00203 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
AP3B1O00203 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.23■□□□□ 0.99
AP3B1O00203 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.23■□□□□ 0.99
AP3B1O00203 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC21.23■□□□□ 0.99
AP3B1O00203 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 15.4 ms