Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
TRIM49D1C9J1S8 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 POMGNT2-201ENST00000344697 2544 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 AC136469.2-201ENST00000623944 1028 ntBASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
TRIM49D1C9J1S8 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 AC092667.1-201ENST00000434301 2586 ntBASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 SRR-208ENST00000576848 588 ntTSL 4 BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 ZNF264-206ENST00000600531 774 ntTSL 2 BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.08■□□□□ 0.97
TRIM49D1C9J1S8 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.96
TRIM49D1C9J1S8 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM49D1C9J1S8 NR1H2-204ENST00000593926 1828 ntAPPRIS P2 TSL 5 BASIC21.08■□□□□ 0.96
TRIM49D1C9J1S8 TMEM178A-201ENST00000281961 1662 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
TRIM49D1C9J1S8 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC21.08■□□□□ 0.96
TRIM49D1C9J1S8 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.96
TRIM49D1C9J1S8 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 NTRK3-206ENST00000540489 2145 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 NDOR1-201ENST00000344894 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.07■□□□□ 0.96
TRIM49D1C9J1S8 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 ZNF664-207ENST00000539644 5108 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 FLVCR1-201ENST00000366971 5939 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC21.06■□□□□ 0.96
TRIM49D1C9J1S8 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 CDV3-201ENST00000264993 3307 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 DUX4L19-201ENST00000557448 1267 ntBASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 AC011298.3-201ENST00000615796 283 ntBASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 HLA-DPB1-211ENST00000418931 1560 ntAPPRIS P2 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 AC006128.1-201ENST00000624704 1661 ntBASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
TRIM49D1C9J1S8 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
TRIM49D1C9J1S8 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 17.9 ms