Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 NKX2-8-201ENST00000258829 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 NAT16-201ENST00000300303 2935 ntAPPRIS P2 TSL 2 BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.49■□□□□ 0.23
TRAV1-1A0A0B4J248 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 AC098818.2-201ENST00000564925 2320 ntBASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 GBX1-201ENST00000297537 1092 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 LRRC1-201ENST00000370882 808 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 HYI-210ENST00000486909 905 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 KLRG2-201ENST00000340940 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 TANGO2-217ENST00000456048 2439 ntTSL 2 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 ARNTL2-209ENST00000546179 1861 ntAPPRIS ALT2 TSL 2 BASIC16.48■□□□□ 0.23
TRAV1-1A0A0B4J248 AURKA-202ENST00000347343 2248 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 AC007225.1-201ENST00000566331 1836 ntBASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 SDHAF1-201ENST00000378887 1117 ntAPPRIS P1 BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 GPX1-201ENST00000419349 1106 ntBASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 AL031602.1-201ENST00000633169 911 ntBASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 AC104581.1-201ENST00000324348 2852 ntAPPRIS P1 TSL 2 BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
TRAV1-1A0A0B4J248 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 TNIP2-203ENST00000503235 1653 ntTSL 3 BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 AC005703.6-201ENST00000623265 1329 ntBASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 PXMP2-201ENST00000317479 957 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 MIR639-201ENST00000384974 98 ntBASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 MDK-206ENST00000407067 1026 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 STRBP-201ENST00000348403 3337 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
TRAV1-1A0A0B4J248 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC16.46■□□□□ 0.22
TRAV1-1A0A0B4J248 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC16.46■□□□□ 0.22
TRAV1-1A0A0B4J248 TFEB-211ENST00000420312 1996 ntTSL 5 BASIC16.46■□□□□ 0.22
TRAV1-1A0A0B4J248 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 PIANP-201ENST00000320591 2323 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
TRAV1-1A0A0B4J248 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 11.6 ms