Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 ME2-216ENST00000639850 2331 ntTSL 5 BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 AC012354.3-201ENST00000623734 483 ntBASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC18.9■□□□□ 0.62
EXOSC1Q9Y3B2 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC18.89■□□□□ 0.62
EXOSC1Q9Y3B2 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
EXOSC1Q9Y3B2 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC18.89■□□□□ 0.62
EXOSC1Q9Y3B2 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
EXOSC1Q9Y3B2 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 PCID2-203ENST00000375457 2372 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 KRT125P-201ENST00000546827 989 ntBASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 WDSUB1-202ENST00000359774 1912 ntAPPRIS P1 TSL 5 BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 AP005212.1-201ENST00000581547 1997 ntBASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 TPM1-208ENST00000404484 1568 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 TERF1-202ENST00000276603 1677 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 AC006128.1-201ENST00000624704 1661 ntBASIC18.89■□□□□ 0.61
EXOSC1Q9Y3B2 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 MGAT5B-201ENST00000301618 4486 ntAPPRIS P3 TSL 5 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 RIMBP3C-202ENST00000433039 5784 ntAPPRIS P2 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC18.88■□□□□ 0.61
EXOSC1Q9Y3B2 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 FGF2-202ENST00000608478 3880 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 AL117332.1-201ENST00000622628 974 ntBASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 PELI3-202ENST00000349459 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 CACTIN-202ENST00000248420 2671 ntAPPRIS P1 TSL 5 BASIC18.87■□□□□ 0.61
EXOSC1Q9Y3B2 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 AC010141.3-201ENST00000456659 717 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 AC092343.1-201ENST00000500224 729 ntTSL 3 BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 AL033527.3-201ENST00000566366 1196 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 AC010997.5-201ENST00000609182 354 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 pRNA.6-201ENST00000610482 90 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 pRNA.5-201ENST00000612139 90 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 pRNA.11-201ENST00000618423 90 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 pRNA.13-201ENST00000619112 90 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 AC003102.1-202ENST00000563394 1796 ntBASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
EXOSC1Q9Y3B2 ARSA-205ENST00000453344 1650 ntTSL 2 BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
EXOSC1Q9Y3B2 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 23.7 ms