Protein–RNA interactions for Protein: Q9Y2N7

HIF3A, Hypoxia-inducible factor 3-alpha, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HIF3AQ9Y2N7 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 TSPY26P-201ENST00000476365 1326 ntBASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 GRAMD4P2-201ENST00000423297 1097 ntBASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 OTUB1-212ENST00000543988 1259 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.07■□□□□ 0.64
HIF3AQ9Y2N7 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 GSR-204ENST00000537535 1323 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 CDKN3-207ENST00000543789 610 ntTSL 5 BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 AC110285.6-201ENST00000617652 491 ntBASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 AL355001.2-201ENST00000620617 1191 ntBASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 RASEF-202ENST00000376447 5576 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.06■□□□□ 0.64
HIF3AQ9Y2N7 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 AC105233.4-201ENST00000642045 216 ntBASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 SNX27-204ENST00000458013 6403 ntAPPRIS ALT1 TSL 5 BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 RASA4CP-201ENST00000424092 1398 ntBASIC19.05■□□□□ 0.64
HIF3AQ9Y2N7 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 PXK-203ENST00000383715 1756 ntTSL 5 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 FUT4-201ENST00000358752 6059 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 MIR939-201ENST00000401314 82 ntBASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 MAG-206ENST00000597035 542 ntTSL 4 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC19.04■□□□□ 0.64
HIF3AQ9Y2N7 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 AC091305.1-201ENST00000479476 895 ntBASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 AC055733.4-201ENST00000638462 1354 ntBASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HIF3AQ9Y2N7 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 MIR572-201ENST00000384983 95 ntBASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HIF3AQ9Y2N7 MFF-208ENST00000409616 1247 ntTSL 5 BASIC19.02■□□□□ 0.64
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms