Protein–RNA interactions for Protein: Q9UBD9

CLCF1, Cardiotrophin-like cytokine factor 1, humanhuman

Predictions only

Length 225 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLCF1Q9UBD9 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 C12orf75-205ENST00000549893 719 ntTSL 3 BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 PARP1-210ENST00000629232 477 ntTSL 5 BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CLCF1Q9UBD9 RARG-204ENST00000543726 1779 ntTSL 2 BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 LINC00682-201ENST00000498940 1625 ntTSL 3 BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.83■□□□□ 0.61
CLCF1Q9UBD9 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 NCF1B-203ENST00000435988 1254 ntBASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 TMEM191B-201ENST00000612978 1220 ntAPPRIS P2 TSL 5 BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 AL050303.2-201ENST00000619798 666 ntBASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CLCF1Q9UBD9 FAM99A-202ENST00000538190 1989 ntBASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 AC026471.6-201ENST00000622954 1905 ntBASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 AGAP1-IT1-201ENST00000440498 664 ntTSL 3 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 AC092171.1-201ENST00000455866 753 ntTSL 2 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 AC005181.1-201ENST00000604782 1256 ntBASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 AC120498.10-201ENST00000621827 505 ntBASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 SMAGP-205ENST00000603864 1518 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC18.82■□□□□ 0.6
CLCF1Q9UBD9 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 AC104771.1-201ENST00000603335 964 ntBASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 AC013268.1-206ENST00000638368 961 ntBASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 AC112229.1-201ENST00000639295 961 ntBASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 KRT16P2-201ENST00000414673 1423 ntBASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 AC242852.2-201ENST00000615738 1807 ntBASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 COMMD5-207ENST00000543949 1571 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
CLCF1Q9UBD9 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 UMAD1-202ENST00000463725 559 ntTSL 4 BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 TERF1P5-201ENST00000477545 1207 ntBASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 HAUS4-205ENST00000541587 1637 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CLCF1Q9UBD9 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 ANAPC13-204ENST00000510994 1840 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 MIF4GD-202ENST00000325102 1306 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CLCF1Q9UBD9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC18.79■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 39.9 ms