Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 RBKS-201ENST00000302188 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 OSBPL5-208ENST00000478260 2653 ntTSL 2 BASIC18.86■□□□□ 0.61
VSX1Q9NZR4 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 POFUT1-201ENST00000375730 1507 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 CRHR1-201ENST00000293493 2621 ntTSL 5 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 AC110285.6-201ENST00000617652 491 ntBASIC18.85■□□□□ 0.61
VSX1Q9NZR4 AL355001.2-201ENST00000620617 1191 ntBASIC18.85■□□□□ 0.61
VSX1Q9NZR4 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 PARN-205ENST00000539279 1557 ntTSL 2 BASIC18.85■□□□□ 0.61
VSX1Q9NZR4 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 RASA4CP-201ENST00000424092 1398 ntBASIC18.84■□□□□ 0.61
VSX1Q9NZR4 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 BCKDK-201ENST00000219794 2128 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 YTHDF1-201ENST00000370334 747 ntTSL 3 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 POLR2F-211ENST00000488684 564 ntTSL 2 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 MAG-206ENST00000597035 542 ntTSL 4 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 AC105233.4-201ENST00000642045 216 ntBASIC18.84■□□□□ 0.61
VSX1Q9NZR4 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC18.84■□□□□ 0.61
VSX1Q9NZR4 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
VSX1Q9NZR4 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VSX1Q9NZR4 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.83■□□□□ 0.61
VSX1Q9NZR4 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC18.83■□□□□ 0.61
VSX1Q9NZR4 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VSX1Q9NZR4 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
VSX1Q9NZR4 MIR939-201ENST00000401314 82 ntBASIC18.83■□□□□ 0.6
VSX1Q9NZR4 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX1Q9NZR4 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC18.83■□□□□ 0.6
VSX1Q9NZR4 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX1Q9NZR4 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX1Q9NZR4 CHRNA10-204ENST00000534359 1474 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
VSX1Q9NZR4 ST3GAL5-222ENST00000638572 4431 ntAPPRIS P2 TSL 1 (best) BASIC18.83■□□□□ 0.6
VSX1Q9NZR4 AC055733.4-201ENST00000638462 1354 ntBASIC18.82■□□□□ 0.6
VSX1Q9NZR4 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 AC091305.1-201ENST00000479476 895 ntBASIC18.82■□□□□ 0.6
VSX1Q9NZR4 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 RUSC1-AS1-203ENST00000450199 1636 ntTSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC18.82■□□□□ 0.6
VSX1Q9NZR4 FAHD1-202ENST00000382668 1845 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 CEBPE-201ENST00000206513 1554 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 CSNK1G2-201ENST00000255641 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 VKORC1L1-202ENST00000434382 1541 ntTSL 2 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 CBR3-201ENST00000290354 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 MIR572-201ENST00000384983 95 ntBASIC18.81■□□□□ 0.6
VSX1Q9NZR4 MFF-208ENST00000409616 1247 ntTSL 5 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 AF213884.3-201ENST00000563833 479 ntBASIC18.81■□□□□ 0.6
VSX1Q9NZR4 AL031432.3-201ENST00000607698 485 ntBASIC18.81■□□□□ 0.6
VSX1Q9NZR4 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
VSX1Q9NZR4 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms