Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 C7orf26-201ENST00000344417 2182 ntAPPRIS P1 TSL 2 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
MKS1Q9NXB0 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 FGF7P6-201ENST00000377614 1890 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 ERF-202ENST00000440177 2032 ntTSL 2 BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 BX664615.2-202ENST00000639056 1888 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 PLK5-205ENST00000642079 1969 ntBASIC20.91■□□□□ 0.94
MKS1Q9NXB0 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 KCNT1-201ENST00000263604 5245 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
MKS1Q9NXB0 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 AC073314.1-201ENST00000568729 2216 ntBASIC20.9■□□□□ 0.94
MKS1Q9NXB0 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 SRD5A1P1-201ENST00000442297 786 ntBASIC20.9■□□□□ 0.94
MKS1Q9NXB0 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 AL138724.1-201ENST00000606771 1088 ntBASIC20.9■□□□□ 0.94
MKS1Q9NXB0 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.9■□□□□ 0.94
MKS1Q9NXB0 STX5-203ENST00000394690 1568 ntTSL 5 BASIC20.89■□□□□ 0.94
MKS1Q9NXB0 YTHDF3-214ENST00000621890 2296 ntTSL 5 BASIC20.89■□□□□ 0.94
MKS1Q9NXB0 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC20.89■□□□□ 0.94
MKS1Q9NXB0 PLEKHB1-204ENST00000398494 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 RCN3-201ENST00000270645 1859 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 TRIM15-210ENST00000619857 2217 ntTSL 5 BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.89■□□□□ 0.93
MKS1Q9NXB0 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 HES6-206ENST00000409574 738 ntTSL 2 BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 BAZ1A-201ENST00000358716 5920 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 AGMAT-201ENST00000375826 2500 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
MKS1Q9NXB0 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 IRF7-205ENST00000397574 1968 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 PTCHD3P2-201ENST00000424937 1205 ntBASIC20.87■□□□□ 0.93
MKS1Q9NXB0 DPP10-AS1-201ENST00000432658 730 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 AL512631.2-201ENST00000604634 923 ntBASIC20.87■□□□□ 0.93
MKS1Q9NXB0 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
MKS1Q9NXB0 TNFRSF6B-201ENST00000369996 1124 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 QDPR-206ENST00000508623 601 ntTSL 3 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 UBC-201ENST00000339647 2688 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 RXFP3-201ENST00000330120 1852 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
MKS1Q9NXB0 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
MKS1Q9NXB0 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 52.1 ms