Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 AC005229.4-201ENST00000610085 2198 ntBASIC19.21■□□□□ 0.67
DDX28Q9NUL7 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 PLEKHH3-204ENST00000591022 2983 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.21■□□□□ 0.67
DDX28Q9NUL7 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 TMEM131-201ENST00000186436 6640 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 RARG-204ENST00000543726 1779 ntTSL 2 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 P2RX2-205ENST00000352418 1200 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 GATM-206ENST00000558336 1522 ntTSL 2 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC19.2■□□□□ 0.66
DDX28Q9NUL7 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 MIR935-201ENST00000401179 91 ntBASIC19.19■□□□□ 0.66
DDX28Q9NUL7 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 UBXN2A-201ENST00000309033 6066 ntAPPRIS P1 TSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC19.19■□□□□ 0.66
DDX28Q9NUL7 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 GATA2-AS1-201ENST00000464242 1163 ntTSL 2 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 RASSF1-AS1-201ENST00000629828 790 ntBASIC19.18■□□□□ 0.66
DDX28Q9NUL7 DNAAF4-201ENST00000321149 1993 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 GXYLT1-202ENST00000398675 7497 ntAPPRIS P4 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC19.18■□□□□ 0.66
DDX28Q9NUL7 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 CA15P2-201ENST00000611168 834 ntBASIC19.17■□□□□ 0.66
DDX28Q9NUL7 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 RALB-208ENST00000631312 311 ntTSL 5 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 CSPG5-202ENST00000383738 4161 ntAPPRIS ALT2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 CNTNAP3B-203ENST00000377561 5379 ntAPPRIS P2 TSL 1 (best) BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 MEN1-202ENST00000315422 3148 ntAPPRIS ALT1 TSL 5 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 ZNF707-202ENST00000418203 2661 ntAPPRIS P1 TSL 5 BASIC19.17■□□□□ 0.66
DDX28Q9NUL7 POLR2F-205ENST00000442738 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 AL157384.1-201ENST00000445995 2473 ntBASIC19.16■□□□□ 0.66
DDX28Q9NUL7 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 LINC01521-201ENST00000504184 1943 ntBASIC19.16■□□□□ 0.66
DDX28Q9NUL7 ADAMTS17-201ENST00000268070 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC19.16■□□□□ 0.66
DDX28Q9NUL7 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.16■□□□□ 0.66
Retrieved 100 of 98,524 protein–RNA pairs in 20.1 ms