Protein–RNA interactions for Protein: Q9NTJ3

SMC4, Structural maintenance of chromosomes protein 4, humanhuman

Predictions only

Length 1,288 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4Q9NTJ3 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 FARSA-201ENST00000314606 1814 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 HPCAL1-201ENST00000307845 1751 ntAPPRIS P1 TSL 1 (best) BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC27.16■■□□□ 1.94
SMC4Q9NTJ3 MOGS-202ENST00000409065 2668 ntTSL 5 BASIC27.15■■□□□ 1.94
SMC4Q9NTJ3 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SMC4Q9NTJ3 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC27.15■■□□□ 1.94
SMC4Q9NTJ3 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC27.15■■□□□ 1.94
SMC4Q9NTJ3 KRT18P14-201ENST00000534205 1250 ntBASIC27.15■■□□□ 1.94
SMC4Q9NTJ3 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC27.15■■□□□ 1.94
SMC4Q9NTJ3 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC27.15■■□□□ 1.94
SMC4Q9NTJ3 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SMC4Q9NTJ3 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SMC4Q9NTJ3 KRT87P-202ENST00000534226 1464 ntBASIC27.14■■□□□ 1.94
SMC4Q9NTJ3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC27.14■■□□□ 1.94
SMC4Q9NTJ3 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC27.14■■□□□ 1.94
SMC4Q9NTJ3 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC27.14■■□□□ 1.94
SMC4Q9NTJ3 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC27.14■■□□□ 1.93
SMC4Q9NTJ3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SMC4Q9NTJ3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC27.14■■□□□ 1.93
SMC4Q9NTJ3 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC27.14■■□□□ 1.93
SMC4Q9NTJ3 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 AL512625.3-202ENST00000591993 1091 ntTSL 1 (best) BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 TRIM3-214ENST00000536344 2704 ntTSL 2 BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 CLN8-213ENST00000637156 1897 ntAPPRIS P1 TSL 5 BASIC27.13■■□□□ 1.93
SMC4Q9NTJ3 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 MRAS-202ENST00000423968 1803 ntAPPRIS P1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 EEF1DP3-203ENST00000566025 782 ntBASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 DCAF8-211ENST00000475733 1426 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 CELF2-213ENST00000633077 1733 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 RARG-204ENST00000543726 1779 ntTSL 2 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 AC009126.1-201ENST00000501338 2245 ntTSL 2 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC27.12■■□□□ 1.93
SMC4Q9NTJ3 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 DYM-203ENST00000442713 2147 ntTSL 2 BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 MPC1-202ENST00000360961 962 ntAPPRIS P2 TSL 5 BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 AC097381.1-201ENST00000429019 1296 ntBASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 AC004528.2-201ENST00000610701 440 ntTSL 5 BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC27.11■■□□□ 1.93
SMC4Q9NTJ3 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 JSRP1-201ENST00000300961 1138 ntAPPRIS P1 TSL 2 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 RNF146-206ENST00000480444 843 ntTSL 2 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4L2-201ENST00000561772 1275 ntBASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4L6-201ENST00000626483 1275 ntBASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4L1-201ENST00000627662 1275 ntBASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4L8-201ENST00000629013 1275 ntBASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4L3-201ENST00000630187 1275 ntBASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4L7-201ENST00000630678 1275 ntBASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 DUX4L5-201ENST00000630834 1275 ntBASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 AP001160.5-201ENST00000636508 485 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC27.1■■□□□ 1.93
SMC4Q9NTJ3 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 HACD1-201ENST00000326961 773 ntTSL 2 BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 LGI4-206ENST00000591633 1113 ntTSL 1 (best) BASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 AC053503.5-201ENST00000601508 636 ntBASIC27.09■■□□□ 1.93
SMC4Q9NTJ3 AC087623.3-201ENST00000607047 1098 ntBASIC27.09■■□□□ 1.93
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms