Protein–RNA interactions for Protein: Q9NQE9

HINT3, Histidine triad nucleotide-binding protein 3, humanhuman

Known RBP Predictions only

Length 182 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HINT3Q9NQE9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 YJEFN3-201ENST00000436027 878 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC19.07■□□□□ 0.64
HINT3Q9NQE9 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 LOXL1-201ENST00000261921 2351 ntAPPRIS P1 TSL 1 (best) BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 LINC01089-202ENST00000429892 1521 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 AL034346.1-201ENST00000568244 1277 ntBASIC19.06■□□□□ 0.64
HINT3Q9NQE9 AC005837.3-201ENST00000612163 286 ntBASIC19.06■□□□□ 0.64
HINT3Q9NQE9 AC011298.3-201ENST00000615796 283 ntBASIC19.06■□□□□ 0.64
HINT3Q9NQE9 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC19.06■□□□□ 0.64
HINT3Q9NQE9 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 E4F1-206ENST00000565090 2028 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 PHOSPHO1-202ENST00000413580 2173 ntTSL 2 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 HES6-206ENST00000409574 738 ntTSL 2 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 PTMA-205ENST00000410064 814 ntTSL 2 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 MARK3-206ENST00000440884 2643 ntTSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 PARN-205ENST00000539279 1557 ntTSL 2 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 FOXD4L3-201ENST00000342833 2039 ntAPPRIS P1 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 AP004607.7-201ENST00000527152 1677 ntBASIC19.05■□□□□ 0.64
HINT3Q9NQE9 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC19.05■□□□□ 0.64
HINT3Q9NQE9 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 UBE2C-202ENST00000335046 737 ntTSL 2 BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 OLIG3-201ENST00000367734 2049 ntAPPRIS P1 BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 AL359317.1-201ENST00000556316 578 ntTSL 4 BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC19.04■□□□□ 0.64
HINT3Q9NQE9 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 AC019069.1-201ENST00000610008 1333 ntBASIC19.03■□□□□ 0.64
HINT3Q9NQE9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 LINC01006-201ENST00000333319 2292 ntBASIC19.03■□□□□ 0.64
HINT3Q9NQE9 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 MGAT4D-208ENST00000515354 1806 ntTSL 3 BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 EDA-201ENST00000338901 1233 ntBASIC19.03■□□□□ 0.64
HINT3Q9NQE9 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 AC004707.1-201ENST00000511627 715 ntTSL 3 BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 GALNT10-202ENST00000377661 3778 ntTSL 5 BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 TMEM17-201ENST00000335390 1797 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC19.03■□□□□ 0.64
HINT3Q9NQE9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 MIR4767-201ENST00000582827 78 ntBASIC19.02■□□□□ 0.64
HINT3Q9NQE9 AC136469.2-201ENST00000623944 1028 ntBASIC19.02■□□□□ 0.64
HINT3Q9NQE9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 CENPU-201ENST00000281453 1998 ntAPPRIS P2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC19.02■□□□□ 0.64
HINT3Q9NQE9 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HINT3Q9NQE9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HINT3Q9NQE9 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HINT3Q9NQE9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HINT3Q9NQE9 GRINA-202ENST00000395068 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.02■□□□□ 0.63
HINT3Q9NQE9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC19.01■□□□□ 0.63
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms