Protein–RNA interactions for Protein: Q9C037

TRIM4, E3 ubiquitin-protein ligase TRIM4, humanhuman

Predictions only

Length 500 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM4Q9C037 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM4Q9C037 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC20.91■□□□□ 0.94
TRIM4Q9C037 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM4Q9C037 ZYG11B-202ENST00000545132 2294 ntTSL 2 BASIC20.91■□□□□ 0.94
TRIM4Q9C037 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM4Q9C037 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
TRIM4Q9C037 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
TRIM4Q9C037 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRIM4Q9C037 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM4Q9C037 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 EYA2-202ENST00000327619 2702 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
TRIM4Q9C037 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC20.9■□□□□ 0.94
TRIM4Q9C037 FLT1-204ENST00000541932 2969 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 SMOC2-206ENST00000535039 1875 ntTSL 5 BASIC20.9■□□□□ 0.94
TRIM4Q9C037 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
TRIM4Q9C037 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
TRIM4Q9C037 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM4Q9C037 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM4Q9C037 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM4Q9C037 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM4Q9C037 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM4Q9C037 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.89■□□□□ 0.94
TRIM4Q9C037 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
TRIM4Q9C037 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC20.89■□□□□ 0.93
TRIM4Q9C037 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM4Q9C037 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM4Q9C037 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM4Q9C037 TMEM161A-202ENST00000450333 1930 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM4Q9C037 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM4Q9C037 GADD45G-202ENST00000375769 977 ntTSL 2 BASIC20.89■□□□□ 0.93
TRIM4Q9C037 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM4Q9C037 AC008443.4-201ENST00000503314 456 ntTSL 4 BASIC20.89■□□□□ 0.93
TRIM4Q9C037 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.89■□□□□ 0.93
TRIM4Q9C037 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM4Q9C037 MAP7-206ENST00000611373 2317 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.93
TRIM4Q9C037 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
TRIM4Q9C037 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 BCR-202ENST00000359540 4708 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 NME4-202ENST00000382940 766 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 RAB43-208ENST00000615093 783 ntTSL 5 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 NME4-211ENST00000620944 1193 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 AC009102.2-201ENST00000606772 1639 ntBASIC20.88■□□□□ 0.93
TRIM4Q9C037 POC1B-209ENST00000549035 2038 ntTSL 2 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 SMARCD1-201ENST00000381513 3237 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
TRIM4Q9C037 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
TRIM4Q9C037 FBXW4P1-201ENST00000426721 2239 ntBASIC20.88■□□□□ 0.93
TRIM4Q9C037 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM4Q9C037 AC087742.1-201ENST00000575880 1738 ntBASIC20.87■□□□□ 0.93
TRIM4Q9C037 LINC01529-204ENST00000636474 1715 ntBASIC20.87■□□□□ 0.93
TRIM4Q9C037 FP325331.1-202ENST00000623531 1380 ntBASIC20.87■□□□□ 0.93
TRIM4Q9C037 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM4Q9C037 DAPK3-202ENST00000545797 2257 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
TRIM4Q9C037 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM4Q9C037 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
TRIM4Q9C037 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
TRIM4Q9C037 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC20.87■□□□□ 0.93
TRIM4Q9C037 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRIM4Q9C037 AC245100.8-202ENST00000629247 1058 ntBASIC20.87■□□□□ 0.93
TRIM4Q9C037 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
TRIM4Q9C037 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC20.87■□□□□ 0.93
TRIM4Q9C037 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM4Q9C037 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM4Q9C037 WTAP-201ENST00000337387 1622 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM4Q9C037 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TRIM4Q9C037 MARK1-203ENST00000402574 5273 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM4Q9C037 PPP4R2-201ENST00000356692 4984 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM4Q9C037 MCC-208ENST00000514701 2855 ntTSL 2 BASIC20.86■□□□□ 0.93
TRIM4Q9C037 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC20.86■□□□□ 0.93
TRIM4Q9C037 AL138724.1-201ENST00000606771 1088 ntBASIC20.86■□□□□ 0.93
TRIM4Q9C037 AC233992.3-201ENST00000607491 485 ntBASIC20.86■□□□□ 0.93
TRIM4Q9C037 TBC1D9-201ENST00000442267 5306 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
TRIM4Q9C037 FMN2-201ENST00000319653 6434 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
TRIM4Q9C037 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TRIM4Q9C037 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM4Q9C037 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM4Q9C037 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TRIM4Q9C037 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
TRIM4Q9C037 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM4Q9C037 TK2-208ENST00000545043 1120 ntTSL 2 BASIC20.85■□□□□ 0.93
TRIM4Q9C037 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 18.5 ms