Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 PTPMT1-202ENST00000326674 768 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC18.71■□□□□ 0.59
COL12A1Q99715 HABP4-202ENST00000375251 2304 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
COL12A1Q99715 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL12A1Q99715 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC18.7■□□□□ 0.58
COL12A1Q99715 KLF1-201ENST00000264834 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL12A1Q99715 KRT17P1-201ENST00000399211 1546 ntBASIC18.7■□□□□ 0.58
COL12A1Q99715 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
COL12A1Q99715 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL12A1Q99715 SPATA2L-202ENST00000335360 1001 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
COL12A1Q99715 GGTLC1-203ENST00000335694 1046 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL12A1Q99715 SMN1-211ENST00000625245 885 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL12A1Q99715 SMN2-215ENST00000628696 885 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
COL12A1Q99715 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
COL12A1Q99715 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.69■□□□□ 0.58
COL12A1Q99715 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL12A1Q99715 AC004812.2-201ENST00000611079 2094 ntBASIC18.69■□□□□ 0.58
COL12A1Q99715 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 PRKY-204ENST00000533551 1019 ntBASIC18.69■□□□□ 0.58
COL12A1Q99715 EEF1DP3-203ENST00000566025 782 ntBASIC18.69■□□□□ 0.58
COL12A1Q99715 SPINT2-202ENST00000454580 1367 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL12A1Q99715 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 SLC47A1P1-201ENST00000420951 500 ntTSL 5 BASIC18.69■□□□□ 0.58
COL12A1Q99715 AC012213.1-202ENST00000523422 449 ntTSL 3 BASIC18.69■□□□□ 0.58
COL12A1Q99715 AC009090.2-201ENST00000565829 472 ntTSL 3 BASIC18.69■□□□□ 0.58
COL12A1Q99715 PLK5-204ENST00000588430 900 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
COL12A1Q99715 AC069544.1-201ENST00000609399 999 ntBASIC18.69■□□□□ 0.58
COL12A1Q99715 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC18.69■□□□□ 0.58
COL12A1Q99715 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC18.69■□□□□ 0.58
COL12A1Q99715 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
COL12A1Q99715 SMARCB1-204ENST00000407422 1643 ntAPPRIS ALT1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC18.68■□□□□ 0.58
COL12A1Q99715 CRAT-202ENST00000393384 973 ntTSL 2 BASIC18.68■□□□□ 0.58
COL12A1Q99715 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC18.68■□□□□ 0.58
COL12A1Q99715 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC18.68■□□□□ 0.58
COL12A1Q99715 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 PPCS-203ENST00000372561 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC18.68■□□□□ 0.58
COL12A1Q99715 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC18.68■□□□□ 0.58
COL12A1Q99715 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
COL12A1Q99715 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC18.68■□□□□ 0.58
COL12A1Q99715 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC18.68■□□□□ 0.58
COL12A1Q99715 SEC23A-213ENST00000557280 561 ntTSL 4 BASIC18.68■□□□□ 0.58
COL12A1Q99715 DEDD-212ENST00000545495 2329 ntAPPRIS P1 TSL 3 BASIC18.67■□□□□ 0.58
COL12A1Q99715 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 AL121894.2-201ENST00000602977 491 ntBASIC18.67■□□□□ 0.58
COL12A1Q99715 AL590326.2-201ENST00000625139 305 ntBASIC18.67■□□□□ 0.58
COL12A1Q99715 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC18.67■□□□□ 0.58
COL12A1Q99715 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC18.67■□□□□ 0.58
COL12A1Q99715 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC18.67■□□□□ 0.58
COL12A1Q99715 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 SERPINH1P1-201ENST00000419794 1249 ntBASIC18.67■□□□□ 0.58
COL12A1Q99715 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC18.67■□□□□ 0.58
COL12A1Q99715 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
COL12A1Q99715 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 AZIN1-AS1-215ENST00000522939 644 ntTSL 2 BASIC18.66■□□□□ 0.58
COL12A1Q99715 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 SOX15-203ENST00000570788 1093 ntBASIC18.66■□□□□ 0.58
COL12A1Q99715 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC18.66■□□□□ 0.58
COL12A1Q99715 RBM42-202ENST00000586618 771 ntTSL 3 BASIC18.66■□□□□ 0.58
COL12A1Q99715 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC18.66■□□□□ 0.58
COL12A1Q99715 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
COL12A1Q99715 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC18.66■□□□□ 0.58
COL12A1Q99715 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC18.66■□□□□ 0.58
COL12A1Q99715 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 AC134349.1-201ENST00000543969 385 ntTSL 3 BASIC18.66■□□□□ 0.58
COL12A1Q99715 HLA-B-256ENST00000639848 1089 ntBASIC18.66■□□□□ 0.58
COL12A1Q99715 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 KRT72-201ENST00000293745 2015 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC18.66■□□□□ 0.58
COL12A1Q99715 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
COL12A1Q99715 CEBPD-201ENST00000408965 2178 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
COL12A1Q99715 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
COL12A1Q99715 TMSB4X-201ENST00000380633 495 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
COL12A1Q99715 KRT17P3-201ENST00000420566 1262 ntBASIC18.65■□□□□ 0.58
COL12A1Q99715 SBF2-AS1-202ENST00000499953 854 ntTSL 5 BASIC18.65■□□□□ 0.58
COL12A1Q99715 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.65■□□□□ 0.58
COL12A1Q99715 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 18.1 ms